1 5' 3' | 2 5' 3' | 3 5' 3' |
TGGTCGGGAGGGCTCTCCCAACGGAAGCAGATCAGCATCCGAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCGCCAAGTCTAAGTTCTGgtaatgttttgtttctattttattagttttgtttttacgagatcctttatgtaatgttttgcgtcaacaatcggagttaattgcctctgtttttgaattataggttttagtttttttttataattttgtatttttttctttcaattag
species | Glycine max |
transcript | GLYMA13G28830.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGAATGAAGCTCTGGGCCACCAACGAGGTTCGCGCCAAGTCTAAGTTCTG GTATTTTTTGAGGAAGCTGAAGAAGGTAAAGAAGAGCAATGGTCAAGTTCTEST: gi|193389576|gb|FK357177.1|FK357177
genomic: CGAATGAAGCTCTGGGCCACCAACGAGGTTCGCGCCAAGTCTAAGTTCTGgtaatgtttt ... tttcaattagGTATTTTTTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGTCAAGTTCT
EST: CGAATGAAGCTCTGGGCCACCAACGAGGTTCGCGCCAAGTCTAAGTTCTG GTATTTTTTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGTCAAGTTEST: gi|4395921|gb|AI494918.1|AI494918
genomic: CGAATGAAGCTCTGGGCCACCAACGAGGTTCGCGCCAAGTCTAAGTTCTGgtaatgtttt ... tttcaattagGTATTTTTTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGTCAAGTT
EST: CGAATGAAGCTCTGGGCCACCAACGAGGTTCGCGCCAAGTCTAAGTTCTG GTATTTTTTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGTCAAGTTCTEST: gi|207825851|gb|GD801034.1|GD801034
genomic: CGAATGAAGCTCTGGGCCACCAACGAGGTTCGCGCCAAGTCTAAGTTCTGgtaatgtttt ... tttcaattagGTATTTTTTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGTCAAGTTCT
EST: CGAATGAAGCTCTGGGCCACCAACGAGGTTCGCGCCAAGTCTAAGTTCTG GTATTTTTTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGTCAAGTTCT
genomic: CGAATGAAGCTCTGGGCCACCAACGAGGTTCGCGCCAAGTCTAAGTTCTGgtaatgtttt ... tttcaattagGTATTTTTTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGTCAAGTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTCGGGAGGGCTCTCCCAACGGAAGCAGATCAGCATCCGAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCGCCAAGTCTAAGTTCTGgtaatgttttgtttctattttattagttttgtttttacgagatcctttatgtaatgttttgcgtcaacaatcggagttaattgcctctgtttttgaattataggttttagtttttttttataattttgtatttttttctttcaattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC