Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATTTCTCCGTATCATTTGTACTTGAACCCTATATTGGTGGTGAAGCAATATCAGTTTTGGCGCCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttctgccgttcaccatttaatgaattgttattcatcagatacttgggcatttcaaattcagttttaatgtagaaaacgtctcaatttttttta...

Basic information

species Glycine max
transcript GLYMA13G27600.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G27600.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G04860.1 (Arabidopsis thaliana), 5'ss of exon 2
ATAATTTCTCCGTATCATTTGTACTTGAACCCTATATTGGTGGTGAAGCAATATCAGTTTTGGCGCCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttctgccgttcaccatttaatgaattgttattcatcagatacttgggcatt----tcaaattcagttttaatgtagaaaacgtc-tcaatttt----tttta----------------------------------------------------------------
|| || ||||| ||| |  | || ||||| || | | | |||||||||||||| || | |||||| || ||||||||||||||||| || || || ||||||||  |||   |    ||| | |  |||||     || || ||  |   ||   |||    ||| ||  || | |  | |     || |  | |  | |    |  ||                                                                
ATCATATCTCCATATAACCTTTATTTGAATCCGACACTTGTGGTGAAGCAATACCAATATTGGCGTCTCGTTACTAATTTCTTGTATTTCCGGAAGATGGgtaa--ttttcccttaacactactctatgaaactggatacaacatttgtgtgcttattactttcatatgaagctcttgtctttgtcacattattagctctaggctgctacttgttaatagcgttgtgactgattgattgcttataaacaaatatgtgtttggggttgttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308645|gb|FG999726.1|FG999726
EST:     ATATCAGTTTTGGCGCCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCTCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGCCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCTCGTTACTGCAAGCTTC
EST: gi|192327521|gb|FK018197.1|FK018197
EST:     ATATCAGTTTTGGCGCCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCTCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGCCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCTCGTTACTGCAAGCTTC
EST: gi|298194426|gb|HO041074.1|HO041074
EST:     ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGCCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCTCGTTACTGCAAGCTTC
EST: gi|192319097|gb|FK010633.1|FK010633
EST:     ATATCAGTTTTGGCGCCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCTCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGCCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCTCGTTACTGCAAGCTTC
EST: gi|192305754|gb|FG995710.1|FG995710
EST:     ATATCAGTTTTGGCGCCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCTCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGCCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCTCGTTACTGCAAGCTTC
EST: gi|192294844|gb|FG987533.1|FG987533
EST:     ATATCAGTTTTGGCGCCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCTCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGCCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCTCGTTACTGCAAGCTTC