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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGTGACTATGTCAAGGACTATGAATTTGTGGCAATATTTGATGCAGATTTCCAGCCCAATCCTGATTTCCTCAAACTAACCATTCCCCATTTTAAGgtaggttctaacactttaagccagataaggacaagttacatgttttctatgtatggtttaaagtctaaaacaaataattgaagaatttattatttatggacttttctttacag

Basic information

species Glycine max
transcript GLYMA13G04480.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G04480.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0066g01730.t01 (Vitis vinifera), 5'ss of exon 2
GTCATGTGACTATGTCAAGGACTATGAATTTGTGGCAATATTTGATGCAGATTTCCAGCCCAATCCTGATTTCCTCAAACTAACCATTCCCCATTTTAAGgtaggttctaacactttaagccagataaggacaagttacatgttttctatgtatggtttaaagtctaaaacaaataattgaagaatttattatttatggacttttctttacag
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GGCCTGTGACTATGTTAAAGACTACGAGTTTGTTGCCATTTTCGACGCAGACTTCCAGCCCAATCCTGATTTCCTCAAGCAAACAATCCCTCACTTTAAGgtattaactagtact--gaatctactgatagtgggat---tatcttttattca-actccctgaccttaaccaatcttctga----tctgcag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19935067|gb|BQ080097.1|BQ080097
EST:     ATTTCCAGCCCAATCCTGATTTCCTCAAACTAACCATTCCCCATTTTAAG                         GGAAAACCTGACTTGGGCCTGGTCCAGGCTAGATGGTCCTTTGTGAACAAG
genomic: ATTTCCAGCCCAATCCTGATTTCCTCAAACTAACCATTCCCCATTTTAAGgtaggttcta ... ttctttacagGGAAAACCTGACTTGGGCCTGGTCCAGGCTAGATGGTCCTTTGTGAACAAG