Sequence
atgc intronic sequence ATGC exonic sequenceTGGAACTATCTTTCTCCTCGCCCTCCTTGGTGGATATCTATCAGACTCTTATCTTGGGAGCTTCTGGACCATCCTCATCTTTGGCTTTGTGGAACTCTCTgtaagctaaccctctcagctctctcttgtgaccacgcgtgcgtctgtgtataatattcttttccatctatgtacgacttttttgtctctctctatatgta...
Basic information
species | Glycine max |
transcript | GLYMA12G28510.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G28510.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g12740.1 (Oryza sativa), 5'ss of exon 2
TGGAACTATCTTTCTCCTCGCCCTCCTTGGTGGATATCTATCAGACTCTTATCTTGGGAGCTTCTGGACCATCCTCATCTTTGGCTTTGTGGAACTCTCTgtaagctaaccctctcagctctctcttgtgaccacgcgtgcgtctgtgtataatattcttttccatctatgtacgacttttttgtctctctctatatgta-----
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TGGCACCGTCTTCCTCCTCTCCCTCCTCGGTGGCTTCCTCTCCGACTCCTACCTCGGAAGCTTCTGGACCATGCTCATCTTCGGCTTCGTCGAGCTCTCCgtaaga-aattgattcatccatccttcatcgtcgatctcttctctttg----atatcgcactacgataaaattgacattctttacacctagatgcaactttttgg
upper sequence: GLYMA12G28510.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0035g01820.t01 (Vitis vinifera), 5'ss of exon 2
TGGAACTATCTTTCTCCTCGCCCTCCTTGGTGGATATCTATCAGACTCTTATCTTGGGAGCTTCTGGACCATCCTCATCTTTGGCTTTGTGGAACTCTCTgtaagctaaccctctcagc-tctctcttgtgaccacgcgtgcgtctgtgtataatattcttttccatctatgtacgacttttttgtctctctctatatgta
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AGGGACTGTCTTCCTCCTCGCCCTTCTTGGTGGCTGCATCTCTGATTCTTATCTTGGGAGTTTCTGGACCATGCTCATCTTTGGGTTTGTTGAGCTCTCTgtaagcctcttctctcatcatctctctctctctctctc-tctctctttctttcttttggttttctgcactttttgtctttctctgacccttacagtcattcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213619901|gb|DB971160.1|DB971160EST: ATCTTGGGAGCTTCTGGACCATCCTCATCTTTGGCTTTGTGGAACTCTCT GGTTTTATATTGCTCTCAGTCCAAGCTCATCTTCCTCAATTGAAGCCACCA
genomic: ATCTTGGGAGCTTCTGGACCATCCTCATCTTTGGCTTTGTGGAACTCTCTgtaagctaac ... gtttttatagGGTTTTATATTGCTCTCAGTCCAAGCTCATCTTCCTCAATTGAAGCCACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGAACTATCTTTCTCCTCGCCCTCCTTGGTGGATATCTATCAGACTCTTATCTTGGGAGCTTCTGGACCATCCTCATCTTTGGCTTTGTGGAACTCTCTgtaagctaaccctctcagctctctcttgtgaccacgcgtgcgtctgtgtataatattcttttccatctatgtacgacttttttgtctctctctatatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc