1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGCAGTAATGGCCTCGTTTCCAATTTGCCTGATTTTAAATCTGTTGCAGCAAACCCTAGGATTCGCCGATTGTTTTGCAGCAAAGCTCCAAAGAAGAAGAgtgagttttattcggtgatgttgtgtgtttcgcgtgtgattgaagctgcttcgttttaatttggttttggcttgctgtgctgctctttagttaagcgttttgattggtattttctcggtttttggcag
species | Glycine max |
transcript | GLYMA12G06530.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAACCCTAGGATTCGCCGATTGTTTTGCAGCAAAGCTCCAAAGAAGAAGA ATTATGAGAACTTCTATCCCAAGGAAAAGAAGGAAGTTCCGAAAGGAAACGEST: gi|208305313|gb|GE105324.1|GE105324
genomic: AAACCCTAGGATTCGCCGATTGTTTTGCAGCAAAGCTCCAAAGAAGAAGAgtgagtttta ... tttttggcagATTATGAGAACTTCTATCCCAAGGAAAAGAAGGAAGTTCCGAAAGGAAACG
EST: AAACCCTAGGATTCGCCGATTGTTTTGCAGCAAAGCTCCAAAGAAGAAGA ATTATGAGAACTTCTATCCCAAGGAAAAGAAGGAAGTTCCGAAAGGAAACGEST: gi|163923237|gb|EH039651.1|EH039651
genomic: AAACCCTAGGATTCGCCGATTGTTTTGCAGCAAAGCTCCAAAGAAGAAGAgtgagtttta ... tttttggcagATTATGAGAACTTCTATCCCAAGGAAAAGAAGGAAGTTCCGAAAGGAAACG
EST: AAACCCTAGGATTCGCCGATTGTTTTGCAGCAAAGCTCCAAAGAAGAAGA ATTATGAGAACTTCTATCCCAAGGAAAAGAAGGAAGTTCCGAAAGGAAACGEST: gi|209707156|gb|BW656773.1|BW656773
genomic: AAACCCTAGGATTCGCCGATTGTTTTGCAGCAAAGCTCCAAAGAAGAAGAgtgagtttta ... tttttggcagATTATGAGAACTTCTATCCCAAGGAAAAGAAGGAAGTTCCGAAAGGAAACG
EST: AAACCCTAGGATTCGCCGATTGTTTTGCAGCAAAGCTCCAAAGAAGAAGA ATTATGAGAACTTCTATCCCAAGGAAAAGAAGGAAGTTCCGAAAGGAAACG
genomic: AAACCCTAGGATTCGCCGATTGTTTTGCAGCAAAGCTCCAAAGAAGAAGAgtgagtttta ... tttttggcagATTATGAGAACTTCTATCCCAAGGAAAAGAAGGAAGTTCCGAAAGGAAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCAGTAATGGCCTCGTTTCCAATTTGCCTGATTTTAAATCTGTTGCAGCAAACCCTAGGATTCGCCGATTGTTTTGCAGCAAAGCTCCAAAGAAGAAGAgtgagttttattcggtgatgttgtgtgtttcgcgtgtgattgaagctgcttcgttttaatttggttttggcttgctgtgctgctctttagttaagcgttttgattggtattttctcggtttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG