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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGCTCAAAACGTTGGAGAGGTACCAGAAATGCAACTATGGAGCGCCTGAGGACAATGTGGCAACAAATGAAGCCTTGGTATTGgtgataatcccatactgttctagctagtatccctttttgcagtagtgtttgcataaagttatattttcagtagtgtctctcttagaaaatcaagttgaag...

Basic information

species Glycine max
transcript GLYMA11G36890.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208095699|gb|GD897161.1|GD897161
EST:     ACTATGGAGCGCCTGAGGACAATGTGGCAACAAATGAAGCCTTGGTATTG                         GNGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCGCGTTATGAAGCT
genomic: ACTATGGAGCGCCTGAGGACAATGTGGCAACAAATGAAGCCTTGGTATTGgtgataatcc ... atgactatagGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCGCGTTATGAAGCT
EST: gi|208324622|gb|GE125755.1|GE125755
EST:     ACTATGGAGCGCCTGAGGACAATGTGGCAACAAATGAAGCCTTGGTATTG                         GAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCGCGTTATGAAGCT
genomic: ACTATGGAGCGCCTGAGGACAATGTGGCAACAAATGAAGCCTTGGTATTGgtgataatcc ... atgactatagGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCGCGTTATGAAGCT
EST: gi|208182440|gb|GD980775.1|GD980775
EST:     ACTATGGAGCGCCTGAGGACAATGTGGCAACAAAGGAAGCCTTGGTATTG                         GAGTTAAGACAGTCAACAAGA
genomic: ACTATGGAGCGCCTGAGGACAATGTGGCAACAAATGAAGCCTTGGTATTGgtgataatcc ... atgactatagGAGTTAAG-CAGTCAACAAGA
EST: gi|193323165|gb|FK291571.1|FK291571
EST:     AATGAAGCCTTGGTATTG                         GAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCGCGTTATGAAGCT
genomic: AATGAAGCCTTGGTATTGgtgataatcc ... atgactatagGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCGCGTTATGAAGCT
EST: gi|18734332|gb|BM528121.1|BM528121
EST:     ACTATGGAGCGCCTGAGGACAATGTGGCAACAAATGAAGCCTTGGTATTG                         GAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCGCGTTATGAAGCT
genomic: ACTATGGAGCGCCTGAGGACAATGTGGCAACAAATGAAGCCTTGGTATTGgtgataatcc ... atgactatagGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCGCGTTATGAAGCT
EST: gi|193414144|gb|FK376178.1|FK376178
EST:     AATGAAGCCTTGGTTATTG                         GAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCGCGTTATGAAGC
genomic: AATGAAGCCTTGG-TATTGgtgataatcc ... atgactatagGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCGCGTTATGAAGC
EST: gi|208086176|gb|GD881926.1|GD881926
EST:     ACTATGGAGCGCCTGAGGACAATGTGGCAACAAATGAAGCCTTGGTATTG                         GAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCGCGTTATG
genomic: ACTATGGAGCGCCTGAGGACAATGTGGCAACAAATGAAGCCTTGGTATTGgtgataatcc ... atgactatagGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCGCGTTATG
EST: gi|193338866|gb|FK302589.1|FK302589
EST:     TGAAGCCTTGGTATTG                         GAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCGCGTTATGAAGCT
genomic: TGAAGCCTTGGTATTGgtgataatcc ... atgactatagGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCGCGTTATGAAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGCTCAAAACGTTGGAGAGGTACCAGAAATGCAACTATGGAGCGCCTGAGGACAATGTGGCAACAAATGAAGCCTTGGTATTGgtgataatcccatactgttctagctagtatccctttttgcagtagtgtttgcataaagttatattttcagtagtgtctctcttagaaaatcaagttgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC