1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAGTAGTAGCAGTAGCAGTAGGAAGAGGATGATCGGCGTCGGAAAGATCAAGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctctctctctctctctctctttttcttctctgatttcctttcagatctcgcgttattcgtcacttcgcttccgtggttaatttgatgtgttggtgcag
species | Glycine max |
transcript | GLYMA11G34840.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAG GTTAGTTTGAGCGCATTCGCGTCCTTGTTCTCGGAGCTTGTTCAGTACAACEST: gi|151396616|gb|EV266493.1|EV266493
genomic: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctc ... gttggtgcagGTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAAC
EST: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAG GTTAGTTTGAGCGCATT-GCGTTCTTGTTCTCGGAGCTTGTTCAGTACAACEST: gi|151410774|gb|EV280589.1|EV280589
genomic: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctc ... gttggtgcagGTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAAC
EST: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAG GTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAACEST: gi|192320522|gb|FK011932.1|FK011932
genomic: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctc ... gttggtgcagGTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAAC
EST: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAG GTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAACEST: gi|298191865|gb|HO035947.1|HO035947
genomic: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctc ... gttggtgcagGTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAAC
EST: AGCAGTACATTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAG GTTAGTTTGAGCGCATTCGCGTTCTTGTTCACGGAGCTTGTTCAGTACAACEST: gi|13477866|gb|BG507568.1|BG507568
genomic: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctc ... gttggtgcagGTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAAC
EST: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAG GTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAACEST: gi|207756090|gb|GD730013.1|GD730013
genomic: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctc ... gttggtgcagGTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAAC
EST: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAG GTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAACEST: gi|151405191|gb|EV275005.1|EV275005
genomic: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctc ... gttggtgcagGTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAAC
EST: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAG GTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAACEST: gi|8286428|gb|BE023996.1|BE023996
genomic: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctc ... gttggtgcagGTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAAC
EST: GACAAGCCCCTCACCAAGGGCAAGCAAGAG GTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAACEST: gi|192320523|gb|FK011933.1|FK011933
genomic: GACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctc ... gttggtgcagGTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAAC
EST: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAG GTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAACEST: gi|151412057|gb|EV281869.1|EV281869
genomic: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctc ... gttggtgcagGTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAAC
EST: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAG GTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAACEST: gi|42723157|gb|CK769056.1|CK769056
genomic: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctc ... gttggtgcagGTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAAC
EST: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAG GTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAACEST: gi|9987096|gb|BE661204.1|BE661204
genomic: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctc ... gttggtgcagGTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAAC
EST: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAG GTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAAC
genomic: AGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctc ... gttggtgcagGTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTAGTAGCAGTAGCAGTAGGAAGAGGATGATCGGCGTCGGAAAGATCAAGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGgtcctttctctctctctctctctctctttttcttctctgatttcctttcagatctcgcgttattcgtcacttcgcttccgtggttaatttgatgtgttggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA