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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTACAAGGTGTCGATTGGAGCAGCTTGTAATCTTTCATGGCCTGCGGATCGTCTCGTCATCCAAGTGCTTGATGATTCTACTGACCCTACCGTCAAGgtatatacacactcataagaggtttttcacattttttttcagtttaattttgagttatattcaatgtgagtttttaatgtgtcaatcttaaagattggaa...

Basic information

species Glycine max
transcript GLYMA11G19490.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19490.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0061g01230.t01 (Vitis vinifera), 5'ss of exon 2
GTGTACAAGGTGTCGATTGGAGCAGCTTGTAATCTTTCATGGCCTGCGGATCGTCTCGTCATCCAAGTGCTTGATGATTCTACTGACCCTACCGTCAAGgtatatacacactcataagaggtttttcacattttttttcagtttaattttgagttatattcaatgtgagtttttaatgtgtcaatcttaaagattggaa
|| |||||| | || |||||||| || ||    ||||| ||||| || ||||||||||| |||||||| || |||||||| || |||||| |  |||||||| ||| | |  |     |  | |     |  |      | || ||     |  | | ||   | |   ||     ||         |    ||||   
GTTTACAAGCTCTCCATTGGAGCTGCATGCGGACTTTCTTGGCCGGCCGATCGTCTCGTGATCCAAGTCCTCGATGATTCAACAGACCCTGCTATCAAGgtagatatataacccacccatttatccaggaaataaaaagaattcaaagcaaaaatctttttttttttctttccccctgatcggtgtcttctcattgctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7639921|gb|AW734233.1|AW734233
EST:     ATCGTCTCGTCATCCAAGTGCTTGATGATTCTACTGACCCTACCGTCAAG                         CAAATGGTGGAGATGGAATGCCAGAGATGGGCAAGTTAGGGCATAAACATA
genomic: ATCGTCTCGTCATCCAAGTGCTTGATGATTCTACTGACCCTACCGTCAAGgtatatacac ... ttgattgcagCAAATGGTGGAGATGGAATGCCAGAGATGGGCAAGTAAGGGCATAAACATA
EST: gi|10847333|gb|BF070038.1|BF070038
EST:     ATCGTCTCGTCATCCAAGTGCTTGATGATTCTACTGACCCTACCGTCAAG                         CAAATGGTGGAGATGGAATGCCAGAGATGGGCAAGTAAGGGCATAAACATA
genomic: ATCGTCTCGTCATCCAAGTGCTTGATGATTCTACTGACCCTACCGTCAAGgtatatacac ... ttgattgcagCAAATGGTGGAGATGGAATGCCAGAGATGGGCAAGTAAGGGCATAAACATA
EST: gi|8282828|gb|BE020389.1|BE020389
EST:     ATCGTCTCGTCATCCAAGTGCTTGATGATTCTACTGACCCTACCGTCAAG                         CAAATGGTGGAGATGGAATGCCAGAGATGGGCAAGTAAGGGCATAAACATA
genomic: ATCGTCTCGTCATCCAAGTGCTTGATGATTCTACTGACCCTACCGTCAAGgtatatacac ... ttgattgcagCAAATGGTGGAGATGGAATGCCAGAGATGGGCAAGTAAGGGCATAAACATA
EST: gi|14999810|gb|BI320624.1|BI320624
EST:     ATCGTCTCGTCATCCAAGTGCTTGATGATTCTACTGACCCTACCGTCAAG                         CAAATGGTGGAGATGGAATGCCAGAGATGGGCAAGTAAGGGCATAAACATA
genomic: ATCGTCTCGTCATCCAAGTGCTTGATGATTCTACTGACCCTACCGTCAAGgtatatacac ... ttgattgcagCAAATGGTGGAGATGGAATGCCAGAGATGGGCAAGTAAGGGCATAAACATA