Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAACCCTACTCTCTTGGCCACTCAGCTTATGGATATCTTCTGCAATGTCATTTTGCATGACAAAGCTATCCAGCGATCCATTCGCCTTGATGTTCAGgtcattcttatttaagcttaattctgttcttactttgtctgatttcacaattttgatctcaatactaattaggtcatttttactgcaatttatttaagct...

Basic information

species Glycine max
transcript GLYMA11G08930.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08930.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G35640.1 (Arabidopsis thaliana), 5'ss of exon 2
CCAAAACCCTACTCTCTTGGCCACTCAGCTTATGGATATCTTCTGCAATGTCATTTTGCATGACAAAGCTATCCAGCGATCCATTCGCCTTGATGTTCAGgtcat--tcttatttaagcttaattc-tgttcttactttgtctgatttcacaattttg--atctcaatactaattaggtcatttttactgcaatttatttaagct
||||||||||||  | ||||| ||||||||||||||||| || ||||| || ||  | ||||||| || ||| ||  | || ||||| |||||||||||||| |      ||| |    |   |   | ||| |  |    ||||| | |   | |    || | | | |    ||     |||||  |    |  ||| |||  
CCAAAACCCTACCTTGTTGGCAACTCAGCTTATGGATATATTTTGCAACGTTATGGTACATGACAGAGGTATTCAAAGCTCGATTCGTCTTGATGTTCAGgtaaaaacgctatctcgtatcggtgaatcttccttttgacactgatattattgtctgagaatgtgactgcagtgtaatgttttttttttttggtccattgaag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348719|gb|BI974314.1|BI974314
EST:     TCATTTTGCATGACAAAGCTATCCAGCGATCCATTCGCCTTGATGTTCAG                         GCATTTAAAGATCGTGACCCTGCTTGTTTGTCGTATTGCTCCGCGCTTTTG
genomic: TCATTTTGCATGACAAAGCTATCCAGCGATCCATTCGCCTTGATGTTCAGgtcattctta ... ttctgaatagGCATTTAAAGATCGTGACCCTGCTTGTTTGTCGTATTGCTCCGCGCTTTTG