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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGACTTTTCCTGAAACTGGCAAGTTTAGAGGGATTGCCATTATTACTTTCAAGgtcaggactattgcactattcttttcttcatttttcctttattttttttattgcaatagagccttttttatttttttattactatcaatctcagttgagc...

Basic information

species Glycine max
transcript GLYMA10G43660.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43660.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g00430.t01 (Vitis vinifera), 5'ss of exon 2
TCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGACTTTTCCTGAAACTGGCAAGTTTAGAGGGATTGCCATTATTACTTTCAAGgtcaggacta---ttgcactattcttttcttcatttttcctttattttttttattgcaatagagccttttttatttttttattactatcaatctcagttgagc-
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TCGGAGTTACTTTGATAGTTGTGGCACCATAACTGAAGTTGACTGTATGATGTTTCCTGAGAGTGGAAAGTTCAGAGGGATAGCCATTATCAGTTTCAAGgtaggtattcagcttgattggttcgctgttcaaatcatgtttgattgtgtcaattttgatcca--ttgcattagtttttag--gcggagaatggcaattatctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120496730|gb|EH224897.1|EH224897
EST:     CTTTTCCTGAAACTGGCAAGTTTAGAGGGATTGCCATTATTACTTTCAAG                         ACTGAAGCAGCAGCCAAAAGAGCATTGGCTCTTGATGGAGCTGACAT
genomic: CTTTTCCTGAAACTGGCAAGTTTAGAGGGATTGCCATTATTACTTTCAAGgtcaggacta ... cttcctgcagACTGAAGCAGCAGCCAAAAGAGCATTGGCTCTTGATGGAGCTGACAT