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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTCCATCAAGAAAAGATGGTATTGATGTACATCATGAGACACACTTGCGGTACTCCTATTGTGCCTTCCTTCAGAATCTTGGAATGCGTCTTGAGCTgtaagacttctattagttgtcaacttgtcacacacccacacacacaaattgagagtgtgtcagattgcctgtttaattacagattttgtgtttttttttt...

Basic information

species Glycine max
transcript GLYMA10G39550.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39550.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0020g03060.t01 (Vitis vinifera), 5'ss of exon 2
ACTCTCCATCAAGAAAAGATGGTATTGATGTACATCATGAGACACACTTGCGGTACTCCTATTGTGCCTTCCTTCAGAATCTTGGAATGCGTCTTGAGCTgtaagacttctattagttgtcaacttgtcacacacccaca-cacacaaatt-gagagtgtgtcagattgcctgtttaat-tacagattttgtgtttttttttt---------------------------------------------------------------------------------------
 ||| || ||||| |||||||||||||||| || || ||| |  || |||||||| || |||||||| || ||||||||||||||| |||| |||||| ||||||   | ||| |   ||    || |   |  |  | | |   |  ||| ||  || ||    ||| |    |   | || | | | |  |||    || |                                                                                       
GCTCCCCTTCAAGGAAAGATGGTATTGATGCACTTCGTGAAATGCATTTGCGGTATTCATATTGTGCTTTTCTTCAGAATCTTGGACTGCGGCTTGAGTTgtaagttctttatgatgcgtatgtttatt-tatgctgataactttctgattagattgtttgcataattactaaatggttctaaaaactattagttgaagttatttagtttagttattcatatattctaattttggaactacttatcaaaaaaaaaaaaattctaatttaactgtgttgtgtatctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311128|gb|FK004467.1|FK004467
EST:     CGGTACTCCTATTGTGCCTTCCTTCAGAATCTTGGAATGCGTCTTGAGCT                         GCCTCAAA-CATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGT
genomic: CGGTACTCCTATTGTGCCTTCCTTCAGAATCTTGGAATGCGTCTTGAGCTgtaagacttc ... ccttttgcagGCCTCAAAACATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGT
EST: gi|192311129|gb|FK004468.1|FK004468
EST:     CGGTACTCCTATTGTGCCTTCCTTCAGAATCTTGGAATGCGTCTTGAGCT                         GCCTCAAAACATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGT
genomic: CGGTACTCCTATTGTGCCTTCCTTCAGAATCTTGGAATGCGTCTTGAGCTgtaagacttc ... ccttttgcagGCCTCAAAACATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGT