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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGGAGACCATGCTTCTCATCAGAAAATTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAGGACAATGTAATTGCAATTATGCTTGATACCAAGgtgataattatgttcttccttcaagttattagcttttaaggatactttgttcatatcacatttctttggtcacagtttagttttcatgtcagctgataattaatttttctctcttttcag

Basic information

species Glycine max
transcript GLYMA10G37210.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37210.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g47080.1 (Oryza sativa), 5'ss of exon 2
TCATGGAGACCATGCTTCTCATCAGAAAATTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAGGACAATGTAATTGCAATTATGCTTGATACCAAGgtgataattatgttcttccttcaagttattagcttttaaggatactttgttcatatcacatttctttggtcacagtttagttttcatgtcag-ctgataattaatttttctctcttttcag
 |||||||||||||| || || |||||| ||||||| || || || ||||||||||||||| | ||||| || || ||||| ||||||||||| || ||||| |  |||||    ||| || |  || |   || | | | ||     ||||| |  |    || |  |   | | |   | ||  ||| || || | |   | |                
ACATGGAGACCATGCATCACACCAGAAAGTTATTGACTTAGTAAAGGAATATAATGCTCAAACAAAGGATAACGTGATTGCTATTATGCTTGACACGAAGgtcagtattat----ttctttgagtttttgtactctaatgtatgggcggttcacagtaatcatcctaagaacctgct--atatttgtgttagtcttacacagagta---------------

upper sequence: GLYMA10G37210.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 2
TCATGGAGACCATGCTTCTCATCAGAAAATTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAGGACAATGTAATTGCAATTATGCTTGATACCAAGgtgataattatgttcttccttcaagttattagcttttaaggatactttgttcatatcacatttctttggtcacagtttagttttcatgtcagctgataattaatttttctctcttttcag
||||||||| |||||||| ||| ||||  |||||||||||||||||||||| ||||| ||| | || |||||    ||||| || |||||||| ||||||||  |  || |  | | |  |  |  ||||  |||  |  |   || ||| ||| |  |   | |   |      || | | |||||                                 
TCATGGAGATCATGCTTCACATAAGAAGGTTATTGATTTGGTTAAAGAATACAATGCACAAACTAAAGACAACACTATTGCTATCATGCTTGACACCAAGgt--ttgtttttgtttcctatttatctatttacttg-agagtctctatgtccatgtatcgcctttgacgattagtttcattgttcatag-------------------------------

upper sequence: GLYMA10G37210.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 2
TCATGGAGACCATGCTTCTCATCAGAAAATTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAGGACAATGTAATTGCAATTATGCTTGATACCAAGgtgataattatgttcttccttcaagttattagcttttaaggatactttgttcatat---cacatttctttggtcacagtttagttttcatg-tcagctgataa--ttaatttttc---tctcttttcag----------------------------------------
||||||||| ||||| |||||||||||  ||||||||||||| ||||| |||||||| |||||||| || ||||| |||||||| ||||||||||||||||  |   || |  |  | |||     || |  | ||| | | | ||   ||||  |    | |||     | | ||    | |||   ||| |||| | |||   || ||||      || ||| | |                                         
TCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttctagttgttctttgtcctacttacattttatgttgctgcattcagttgcttaaattgaccagtttactaagttgttggaatgctcagataatacccttcatttagtggatcccttcttacttggcaattatcttgtttacttccttttctttgctaccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21994842|gb|BQ786370.1|BQ786370
EST:     ATAATGCTCAATCCAAGGACAATGTAATTGCAATTATGCTTGATACCAAG                         GGTCCTGAGGTTAGGAGTGGGGATTTGCCACAACCAATCAATTTAACAACT
genomic: ATAATGCTCAATCCAAGGACAATGTAATTGCAATTATGCTTGATACCAAGgtgataatta ... ctcttttcagGGTCCTGAGGTTAGGAGTGGGGATTTGCCACAACCAATCAATTTAACAACT