Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCCGGCACTGTGAAGTTCCTGAAGCATAAGGCTTCCGGCAAGGTTAGGCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctttcttcttttcttattcggttttgcgtctgtttttgcttcagaattttgattttgagattttgtttatttgtttttttgttattgattgttgcag

Basic information

species Glycine max
transcript GLYMA10G36500.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315535|gb|GR825344.1|GR825344
EST:     GATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|58015207|gb|CX701949.1|CX701949
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|10843761|gb|BF067030.1|BF067030
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|7924135|gb|AW830161.1|AW830161
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|16105079|gb|BI892819.1|BI892819
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|213598628|gb|DB964250.1|DB964250
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|254315536|gb|GR825345.1|GR825345
EST:     GATCTGCGCTAATCATCTCA                         -TTTG-CTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|254322065|gb|GR837479.1|GR837479
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|26045879|gb|CA783312.1|CA783312
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|9984280|gb|BE658388.1|BE658388
EST:     GCTTCTCATGANNNAATCCAAGACGCTCAAGANCNGCGCTAATCATCTCA                         TTTNNNNNACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|193572192|gb|FK532415.1|FK532415
EST:     GATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|58019537|gb|CX706279.1|CX706279
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|9985899|gb|BE659905.1|BE659905
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|18040952|gb|BM309246.1|BM309246
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|7042320|gb|AW472214.1|AW472214
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|254322064|gb|GR837478.1|GR837478
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|9985900|gb|BE659906.1|BE659906
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|5510355|gb|AI856680.1|AI856680
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|6567189|gb|AW234804.1|AW234804
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|9565033|gb|BE474542.1|BE474542
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|24205315|gb|BU964568.1|BU964568
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST: gi|192330808|gb|FK021595.1|FK021595
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA                         TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG