1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGCTACAGTCTTCCAGGCTACAAAACTCGATATGATAATGTCAATCTAATTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttcacaacaattgatgttacatactatcattttaattctgatcaatataatttgtttagcatttatgggtctcag
species | Glycine max |
transcript | GLYMA10G06590.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG -TTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTEST: gi|254329852|gb|GR839405.1|GR839405
genomic: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtctcagGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAT GTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTEST: gi|14259098|gb|BG882006.1|BG882006
genomic: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtctcagGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTEST: gi|151393897|gb|EV263768.1|EV263768
genomic: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtctcagGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTEST: gi|19268871|gb|BM885127.1|BM885127
genomic: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtctcagGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTEST: gi|213602099|gb|DB962592.1|DB962592
genomic: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtctcagGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TTACAATTCGTGAAAATACTGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTEST: gi|192322775|gb|FK014466.1|FK014466
genomic: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtctcagGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: CGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTEST: gi|209725272|gb|BW672747.1|BW672747
genomic: CGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtctcagGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTTGTAGAAAGTCTCAGAATCATTACACGTCAAGCAAGTEST: gi|151403480|gb|EV273290.1|EV273290
genomic: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtctcagGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATCACACGTCAAGCAAGTEST: gi|192328451|gb|FK020725.1|FK020725
genomic: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtctcagGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTEST: gi|209700402|gb|BW664415.1|BW664415
genomic: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtctcagGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAN GTTGTGAGNAG-TGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGEST: gi|8286498|gb|BE024057.1|BE024057
genomic: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtctcagGTTGTGAG-AGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAG
EST: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTEST: gi|10233963|gb|BE802851.1|BE802851
genomic: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtctcagGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTEST: gi|298171951|gb|HO021543.1|HO021543
genomic: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtctcagGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTTGTAGAAAGTCTC
genomic: TTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtctcagGTTGTGAGAGGTGTTGTAGAAAGTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTACAGTCTTCCAGGCTACAAAACTCGATATGATAATGTCAATCTAATTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttcacaacaattgatgttacatactatcattttaattctgatcaatataatttgtttagcatttatgggtctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA