1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTGGGGCTAGGTTTCTGCTTACTAGTACTAGTGAGGTTTACGGTGATCCGTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATCGgtgagtgagtgaatgaatggaccatgcttttatgttttaacataaataacttgtcttttcgttgttggtttggtttgttgagattttggtttggtgatttcag
species | Glycine max |
transcript | GLYMA10G05260.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATCG GTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGCGGAGACGTTGGCCAEST: gi|208275109|gb|GE066431.1|GE066431
genomic: GTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATCGgtgagtgagt ... gtgatttcagGTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGCGGAGACGTTGGCCA
EST: TTGGTAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATTG GTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGCGGAGACGTTGGCCAEST: gi|10709383|gb|BF009107.1|BF009107
genomic: TTGG-AGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATCGgtgagtgagt ... gtgatttcagGTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGCGGAGACGTTGGCCA
EST: GTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATTG GTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGCGGAGACGTTGGCCAEST: gi|8283259|gb|BE020820.1|BE020820
genomic: GTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATCGgtgagtgagt ... gtgatttcagGTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGCGGAGACGTTGGCCA
EST: GTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATTG GTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGCGGAGACGTTGGCCAEST: gi|21887804|gb|BQ741017.1|BQ741017
genomic: GTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATCGgtgagtgagt ... gtgatttcagGTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGCGGAGACGTTGGCCA
EST: GTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATCG GTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGCGGAGACGTTGGCCAEST: gi|14259336|gb|BG882252.1|BG882252
genomic: GTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATCGgtgagtgagt ... gtgatttcagGTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGCGGAGACGTTGGCCA
EST: GTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATCG GTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGCGGAGACGTTGGCCAEST: gi|42722441|gb|CK768341.1|CK768341
genomic: GTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATCGgtgagtgagt ... gtgatttcagGTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGCGGAGACGTTGGCCA
EST: GTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATCG GTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGC
genomic: GTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATCGgtgagtgagt ... gtgatttcagGTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGGGCTAGGTTTCTGCTTACTAGTACTAGTGAGGTTTACGGTGATCCGTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATCGgtgagtgagtgaatgaatggaccatgcttttatgttttaacataaataacttgtcttttcgttgttggtttggtttgttgagattttggtttggtgatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA