1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGGTTAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGgtactgttctttggactgttattaaagcttttattcgcctaatgcgacaaaggtaaatgccagttattggtgtggctaaatttctcatcatttggcag
species | Glycine max |
transcript | GLYMA09G37020.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCCAG GGAGATTCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCEST: gi|17964323|gb|BM271060.1|BM271060
genomic: ACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGgtactgttct ... catttggcagG-AGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCC
EST: ACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAG GAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACGEST: gi|120532139|gb|EH260272.1|EH260272
genomic: ACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGgtactgttct ... catttggcagGAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACG
EST: ACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAG GAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAAAGACGEST: gi|37997541|gb|CF809130.1|CF809130
genomic: ACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGgtactgttct ... catttggcagGAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACG
EST: ACACTTCTGCCTACTTTNTTAAGAAAACCGCTGATCTCATTGATTTCAAG GAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCA-CGACEST: gi|9564128|gb|BE473637.1|BE473637
genomic: ACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGgtactgttct ... catttggcagGAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGAC
EST: ACACTTCTGCCTACTTTTTTAAGAAGACCGCTGATCTCATTGATTTCCAG GAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACGEST: gi|7684793|gb|AW755441.1|AW755441
genomic: ACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGgtactgttct ... catttggcagGAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACG
EST: ACACTTCTGCCTACTGTTTTAAGAAAACCGCTGATCTCATTGATTTCAAG GAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACG
genomic: ACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGgtactgttct ... catttggcagGAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGGTTAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGgtactgttctttggactgttattaaagcttttattcgcctaatgcgacaaaggtaaatgccagttattggtgtggctaaatttctcatcatttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT