1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTAATGCTTGTGGGGTGGGGGGGAAACAATGGCTCAACCCTCACTGGTGGTGTTATTGCTAACCGAGAgttagtttcatcttcaattcctaatcattaacgttttaatttatttcttcttcttcttattttttgtggctatggtaatggctataaaataatttaagggtaaccatgtatgtatgtgaattatgtttctcacttctcag
species | Glycine max |
transcript | GLYMA08G14670.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATGGCTCAACCCTCACTGGTGGTGTTATTGCTAACCGAGA GGGTATTTCATGGGCAACAAAGGACAAGATTCAACAAGCCAATTACTTTGGEST: gi|31561688|gb|CD487526.1|CD487526
genomic: AATGGCTCAACCCTCACTGGTGGTGTTATTGCTAACCGAGAgttagtttca ... cacttctcagGGGTATTTCATGGGCAACAAAGGACAAGATTCAACAAGCCAATTACTTTGG
EST: CCTCACTGGTGGTGTTATTGCTAACCGAGA GGGTATTTCATGGGCAACAAAGGACAAGATTCAACAAGCCAATTACTTTGGEST: gi|21638055|gb|BM108210.1|BM108210
genomic: CCTCACTGGTGGTGTTATTGCTAACCGAGAgttagtttca ... cacttctcagGGGTATTTCATGGGCAACAAAGGACAAGATTCAACAAGCCAATTACTTTGG
EST: CTCAACCCTCACTGGTGGTGTTATTGCTAACCGAGA GGGTATTTCATGGGCAACAAAGGACAAGATTCAACAAGCCAATTACTTTGGEST: gi|9901531|gb|BE610499.1|BE610499
genomic: CTCAACCCTCACTGGTGGTGTTATTGCTAACCGAGAgttagtttca ... cacttctcagGGGTATTTCATGGGCAACAAAGGACAAGATTCAACAAGCCAATTACTTTGG
EST: GCTCAACCCTCACTGGTGGTGTTATTGCTAACCGAGA GGGTATTTCATGGGCAACAAAGGACAAGATTCAACAAGCCAATTACTTTGG
genomic: GCTCAACCCTCACTGGTGGTGTTATTGCTAACCGAGAgttagtttca ... cacttctcagGGGTATTTCATGGGCAACAAAGGACAAGATTCAACAAGCCAATTACTTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTAATGCTTGTGGGGTGGGGGGGAAACAATGGCTCAACCCTCACTGGTGGTGTTATTGCTAACCGAGAgttagtttcatcttcaattcctaatcattaacgttttaatttatttcttcttcttcttattttttgtggctatggtaatggctataaaataatttaagggtaaccatgtatgtatgtgaattatgtttctcacttctcag
- - - - - - - - - - - - - - - - - - - - - - TGGTGG