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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTAACAACCGAAATTTGTCTGACTGTGTGGCTATCCAACAGAAAATAAAGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAGgtattgctctctgattcatttttcgttcaagattcaaatagtcatttgtttgtacccgtgggtaagaagtttgattgaaccgttgttattggccaaacaa...

Basic information

species Glycine max
transcript GLYMA08G12840.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12840.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g03660.t01 (Vitis vinifera), 5'ss of exon 2
CCGTAACAACCGAAATTTGTCTGACTGTGTGGCTATCCAACAGAAAATAAAGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAGgtattgctctctgattcatttttcgttcaagattcaaatagtcatttgtttgtac----ccgtgggtaagaagtttgattgaaccgttgttattggccaaacaa
 |  || |||||     ||   |||       |||| ||||| ||| ||||| |||| | |||||| |||| ||| ||||||||||| ||||||||||||||||||||||||   |    |    ||  |  |||   |      ||| |   |     |  | || |  ||  |||  | ||         || |        
TCAGAAGAACCGTGGACTGCTGGACCTCTCATCTATTCAACAAAAATTAAAGGTTGCCCATGATTACACTTATCTGCTTAACAGTGTGCACCATCACAAGgtattgctctctttctttcctaaatttttatgttctgttttcatcttggtaacaagaagcaattggaagaaaacttggatcaattacctagttttgttgt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298181515|gb|HO022954.1|HO022954
EST:     AGCTTGTTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAG                         GATTTACTTTTTTCATACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA
genomic: AGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAGgtattgctct ... atttttgcagGATTTACTTTTTTCATACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA
EST: gi|298178697|gb|HO024432.1|HO024432
EST:     AGCTTGTTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAG                         GATTTACTTTTTTCATACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA
genomic: AGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAGgtattgctct ... atttttgcagGATTTACTTTTTTCATACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA
EST: gi|21994963|gb|BQ786491.1|BQ786491
EST:     AGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAG                         GATTTACTTTTTTCATACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA
genomic: AGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAGgtattgctct ... atttttgcagGATTTACTTTTTTCATACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA
EST: gi|151398859|gb|EV268730.1|EV268730
EST:     AGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAG                         GATTTACTTTTTTCATACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA
genomic: AGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAGgtattgctct ... atttttgcagGATTTACTTTTTTCATACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA