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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGTCGTGGCGCCCAACACGCGTATTCAGGATTTGGTTAACCGAAACGACACTCGCCTCCGGATATTCTCCGGCACCGCCAATCCGGCGCTCGCTCAGgtcgtgcttcctaaagcgattcgtttttcgtgttggaaatttggagtagtgagattagtgcttagttttgattgtaggttgtgtatggataatcgaagtg...

Basic information

species Glycine max
transcript GLYMA07G12660.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254348826|gb|GR852505.1|GR852505
EST:     ACACTCGCCTCCGGATATTCTCCGGCACCGCCAATCCGGCGCTCGCTCAG                         GAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAACTAAGATAAAGCGT
genomic: ACACTCGCCTCCGGATATTCTCCGGCACCGCCAATCCGGCGCTCGCTCAGgtcgtgcttc ... atttaagtagGAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAACTAAGATAAAGCGT
EST: gi|298185832|gb|HO030993.1|HO030993
EST:     ACACTCGCCTCCGGATATTCTCCGGCACCGCCAATCCGGCGCTCGCTCAG                         GAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAACTAAGATAAAGCGT
genomic: ACACTCGCCTCCGGATATTCTCCGGCACCGCCAATCCGGCGCTCGCTCAGgtcgtgcttc ... atttaagtagGAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAACTAAGATAAAGCGT
EST: gi|4313916|gb|AI461035.1|AI461035
EST:     ACACTCGCCTNCGGATATTCTCCGGCACCGCCAATCCGGCGCTCGCTCAG                         GAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAACTAAGATANAGCGT
genomic: ACACTCGCCTCCGGATATTCTCCGGCACCGCCAATCCGGCGCTCGCTCAGgtcgtgcttc ... atttaagtagGAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAACTAAGATAAAGCGT
EST: gi|27446243|gb|CA953366.1|CA953366
EST:     ACACTCGCCTCCGGATATTCTCCGGCACCGCCAATCCGGCGCTCGCTCAG                         GAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAACTAAGATAAAGCGT
genomic: ACACTCGCCTCCGGATATTCTCCGGCACCGCCAATCCGGCGCTCGCTCAGgtcgtgcttc ... atttaagtagGAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAACTAAGATAAAGCGT
EST: gi|16997052|gb|BM086424.1|BM086424
EST:     ACACTCGCCTCCGGATATTCTCCGGCACCGCCAATCCGGCGCTCGCTCAG                         GAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAACTAAGATAAAGCGT
genomic: ACACTCGCCTCCGGATATTCTCCGGCACCGCCAATCCGGCGCTCGCTCAGgtcgtgcttc ... atttaagtagGAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAACTAAGATAAAGCGT
EST: gi|209708416|gb|BW665391.1|BW665391
EST:     ACACTCGCCTCCGGATATTCTCCGGCACCGCCAATCCGGCGCTCGCTCAG                         GAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAACTAAGATAAAGCGT
genomic: ACACTCGCCTCCGGATATTCTCCGGCACCGCCAATCCGGCGCTCGCTCAGgtcgtgcttc ... atttaagtagGAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAACTAAGATAAAGCGT