Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGAACTTACTAAAATTCCTTGCCAAAGTAATGAGTTTGTCGCCGAGCTGCTTCGCGGTGTGCGCCTCCATTTTGATAGGTTTGTCAGTGATCTCAAGgttagcatttactcctgcctcgtgtgtttttgcagaagcagaatcaccgtgttgtataggaatatatttcgcaagttattttatttaaattattttttttccttgattgaattctgtag

Basic information

species Glycine max
transcript GLYMA07G11560.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G11560.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 2
ATCTGAACTTACTAAAATTCCTTGCCAAAGTAATGAGTTTGTCGCCGAGCTGCTTCGCGGTGTGCGCCTCCATTTTGATAGGTTTGTCAGTGATCTCAAGgttagc---atttactcctgcctc----gtgtgtttttgcagaagca-gaatcaccgtgttgtataggaata---tatttcgcaagttattttatttaaattattttttttccttgattgaattctgtag
 | ||||  ||||||||||||||||||||| |||||||||||    ||||| || || ||||||||  | ||||||||||||||| | |  |||||||||||| ||   ||||| |  | ||       | || || |||        | || ||     |  |  || |     |||||     |  ||||   ||| | ||||| |||| | |  | |          
CTTTGAAGATACTAAAATTCCTTGCCAAAGCAATGAGTTTGTTCTTGAGCTTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgctttatttattttttccctcaaaatatgcttctgcctttttgtgtattacaacaattaaagggtaggcggtattttctttgcaatttctcttatagtatttatttttccttgtag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207807220|gb|GD779319.1|GD779319
EST:     TGTGCGCCTCCATTTTGATAGGTTTGTCAGTGATCTCAAG                         TCCGGGGATTTGGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGA
genomic: TGTGCGCCTCCATTTTGATAGGTTTGTCAGTGATCTCAAGgttagcattt ... aattctgtagTCCGGGGATTTGGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGA