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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTTCCAGATGGAGCAGAGCAGTATATTGAAAAACTTGGTCAATACATTCCAATGAATGGCGGTATTCTGAGGACTGCTCTTGATATGGGATGTGGGgtgggatctattttcctgtttcattttgagaccttattactagtatttgttgtttagcatgaaaatatttcttttgttttacag

Basic information

species Glycine max
transcript GLYMA07G08360.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G08360.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0048g01990.t01 (Vitis vinifera), 5'ss of exon 2
AATGTTTCCAGATGGAGCAGAGCAGTATATTGAAAAACTTGGTCAATACATTCCAATGAATGGCGGTATTCTGAGGACTGCTCTTGATATGGGATGTGGGgtgggatctattttcctgtttcattttgagaccttattactagtatttgttgtt----tagcatgaaaatatttctt---------ttgttttacag
|||||| |||||||| ||||| ||||||||||| |||||    || ||||||||  | | ||| ||  |||| ||||| ||||||||||||||||||||||| ||| ||  |||||||| |   ||||||  || |  | |    ||| ||       ||   |   || ||  |||         || | || |||
AATGTTCCCAGATGGGGCAGAACAGTATATTGAGAAACTCTCACAGTACATTCCTTTAACTGGTGGAGTTCTAAGGACGGCTCTTGATATGGGATGTGGGgtaggagctgctttcctgtgtttatttgagctctaaccattgccctttttttcccctatatttttggaagatcacttaaaattgatttctcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19936782|gb|BQ081011.1|BQ081011
EST:     TTCCAATGAATGGCGGTATTCTGAGGACTGCTCTTGATATGGGATGTGGG                         GTTGCCAGTTTTGGAGGATATTTGCTAGCT
genomic: TTCCAATGAATGGCGGTATTCTGAGGACTGCTCTTGATATGGGATGTGGGgtgggatcta ... tgttttacagGTTGCCAGTTTTGGAGGATATTTGCTAGCT
EST: gi|10709365|gb|BF009089.1|BF009089
EST:     TTCCAATGAATGGCGGTATTCTGAGGACTGCTCTTGATATGGGATGTGGG                         GTTGCCAGTTTTGGAGGATATTTGCTAGCTCAAAACATATTAACCATGTCT
genomic: TTCCAATGAATGGCGGTATTCTGAGGACTGCTCTTGATATGGGATGTGGGgtgggatcta ... tgttttacagGTTGCCAGTTTTGGAGGATATTTGCTAGCTCAAAACATATTAACCATGTCT
EST: gi|10709421|gb|BF009145.1|BF009145
EST:     TTCCAATGAATGGCGGTATTCTGAGGACTGCTCTTGATATGGGATGTGGG                         GTTGCCAGTTTTGGAGGATATTTGCTAGCTCAAAACATATTAACCATGTCT
genomic: TTCCAATGAATGGCGGTATTCTGAGGACTGCTCTTGATATGGGATGTGGGgtgggatcta ... tgttttacagGTTGCCAGTTTTGGAGGATATTTGCTAGCTCAAAACATATTAACCATGTCT
EST: gi|22521706|gb|BU080517.1|BU080517
EST:     TTCCAATGAATGGCGGTATTCTGAGGACTGCTCTTGATATGGGATGTGGG                         GTTGCCAGTTTTGGAGGATATTTGCTAGCTCAAAACATATTAACCATGTCT
genomic: TTCCAATGAATGGCGGTATTCTGAGGACTGCTCTTGATATGGGATGTGGGgtgggatcta ... tgttttacagGTTGCCAGTTTTGGAGGATATTTGCTAGCTCAAAACATATTAACCATGTCT