1 5' 3' | 2 5' 3' | 3 5' 3' |
AGGTTTGTTTAATTTCAATGGAATCAAGGGCGTGGCTTGTGGTATTCTTGCAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAGgttttaattgagcttaaaattttaaatgcatttgctaggatatcttattttgatctatggaagttcaacaaagaatcatataataattaattgactgcta...
species | Glycine max |
transcript | GLYMA06G13640.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAG AGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTTEST: gi|298171589|gb|HO021181.1|HO021181
genomic: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAGgttttaattg ... ttccttgcagAGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTT
EST: CAGCTTGAGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAG AGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTTEST: gi|58021910|gb|CX708651.1|CX708651
genomic: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAGgttttaattg ... ttccttgcagAGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTT
EST: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAG AGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTTEST: gi|151398004|gb|EV267882.1|EV267882
genomic: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAGgttttaattg ... ttccttgcagAGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTT
EST: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAG AGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTTEST: gi|13562703|gb|BG550923.1|BG550923
genomic: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAGgttttaattg ... ttccttgcagAGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTT
EST: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAG AGGCTACCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTTEST: gi|192321720|gb|FK013602.1|FK013602
genomic: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAGgttttaattg ... ttccttgcagAGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTT
EST: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAG AGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTTEST: gi|120532686|gb|EH260819.1|EH260819
genomic: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAGgttttaattg ... ttccttgcagAGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTT
EST: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAG AGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTTEST: gi|192320229|gb|FK012675.1|FK012675
genomic: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAGgttttaattg ... ttccttgcagAGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTT
EST: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAG AGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTT
genomic: CAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAGgttttaattg ... ttccttgcagAGGCTTCCCCCATTGTCAACTGAGCCCAATCGCTGTGAGCGTGCATTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTTTGTTTAATTTCAATGGAATCAAGGGCGTGGCTTGTGGTATTCTTGCAGCTTGTGCTGTTACTTCTGCTGCATTTCCTGTTACTGCTGCTACTCAGgttttaattgagcttaaaattttaaatgcatttgctaggatatcttattttgatctatggaagttcaacaaagaatcatataataattaattgactgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT