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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGTCACCAACGAAGGCCTCGTCGAGGAAGCATGGCAGATTGTCAACGACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAGgtaactaacatcatctactcatactctcatagtgtcttatggttggttggttcatggttcatggctcgtgctaatatagcgcttcttgtttccag

Basic information

species Glycine max
transcript GLYMA05G29820.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312280|gb|BG405931.1|BG405931
EST:     ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAG                         CTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
genomic: ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAGgtaactaaca ... ttgtttccagCTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
EST: gi|120533174|gb|EH261307.1|EH261307
EST:     ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAG                         CTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
genomic: ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAGgtaactaaca ... ttgtttccagCTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
EST: gi|9258053|gb|BE346200.1|BE346200
EST:     TCGCCACAGATGGTCCCAGGACACTTGGCAG                         CTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
genomic: TCGCCACAGATGGTCCCAGGACACTTGGCAGgtaactaaca ... ttgtttccagCTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
EST: gi|20811748|gb|BQ296226.1|BQ296226
EST:     ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAG                         CTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
genomic: ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAGgtaactaaca ... ttgtttccagCTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
EST: gi|120532592|gb|EH260725.1|EH260725
EST:     ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGTAG                         CTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
genomic: ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAGgtaactaaca ... ttgtttccagCTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTGTCACCAACGAAGGCCTCGTCGAGGAAGCATGGCAGATTGTCAACGACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAGgtaactaacatcatctactcatactctcatagtgtcttatggttggttggttcatggttcatggctcgtgctaatatagcgcttcttgtttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG