Sequence
atgc intronic sequence ATGC exonic sequenceAGTGATGGCAAGTTCAGGGGATTTGACATTGGAACTGGAGCCAGTTGCATTTACCCCCTTCTTGGTGCTTCTCTTCATGGATGGAGTTTTGTAGGATCAGgtatattgtttttcaacaaaacttagatgcatctctttgattgattctggtgttattctcctataagaattagagtttctcataggttatcgttatcaag...
Basic information
species | Glycine max |
transcript | GLYMA05G26370.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G26370.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G21070.3 (Arabidopsis thaliana), 5'ss of exon 2
AGTGATGGCAAGTTCAGGGGATTTGACATTGGAACTGGAGCCAGTTGCATTTACCCCCTTCTTGGTGCTTCTCTTCATGGATGGAGTTTTGTAGGATCAGgtatat--tgtttttcaacaaaacttagatgcatctctttgattgattctggtgttattctcctataagaattagagtttctcatag-gttatcgt-tatcaag
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GATGGAAGTAAAGTAAAGGGCTTTGACATTGGTACTGGGGCTAATTGCATTTATCCTCTCCTTGGTGCATCTCTTTTTGGTTGGAGTTTTGTTGGCTCAGgtttttcttcttcttttattatactt---catctgcattatactagcttctttagtagttggctctatgttctcaatttggtgacaatgttgttttgtatgcag
upper sequence: GLYMA05G26370.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g02100.t01 (Vitis vinifera), 5'ss of exon 2
AGTGATGGCAAGTTCAGGGGATTTGACATTGGAACTGGAGCCAGTTGCATTTACCCCCTTCTTGGTGCTTCTCTTCATGGATGGAGTTTTGTAGGATCAGgta-tattgtt--tttcaac---aaaacttagatgcatctctttgattgattctggtgttattctcctataagaattagagtttctcataggttatcgttatcaag-
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GATGGAAATAATGTGAGGGGTTTTGACATTGGAACTGGAGCCAATTGCATTTACCCACTTCTTGGTGCATCTCTTTTGGGATGGAGCTTTGTTGGGACAGgtagcacttttagtttcagtcttagttctcatatacacaggtcttaccaattt--gttcatttcttgcataaaaattaggtattcaatgttgcaatcttggttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254322767|gb|GR835589.1|GR835589EST: TTACCCCCT-CTTGGTGCTTCTCTTCATGGATGGAGTTTTGTAGGATCAG ATGTGGACTGATGTTGCAAT
genomic: TTACCCCCTTCTTGGTGCTTCTCTTCATGGATGGAGTTTTGTAGGATCAGgtatattgtt ... ctgactgcagATGTG-ACTGATGTTGCAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTGATGGCAAGTTCAGGGGATTTGACATTGGAACTGGAGCCAGTTGCATTTACCCCCTTCTTGGTGCTTCTCTTCATGGATGGAGTTTTGTAGGATCAGgtatattgtttttcaacaaaacttagatgcatctctttgattgattctggtgttattctcctataagaattagagtttctcataggttatcgttatcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA