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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGATGGGCTTGTGTTCAGGCAGAACTTCCCCATTAGGTCCTATGAGATTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagcttttgcaaaaaattgctgagaattgcattcagcaatcacgataaatataacttttaataaattattatagaagttaagtaacttatcacgggtt...

Basic information

species Glycine max
transcript GLYMA04G21910.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G21910.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g39520.2 (Oryza sativa), 5'ss of exon 2
GCAGGATGGGCTTGTGTTCAGGCAGAACTTCCCCATTAGGTCCTATGAGATTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagcttttgcaaaaaattgctgagaattgcattcagcaatcacgataaatataacttttaataaattattatagaagttaagtaacttatcacgggtt
 || || |||||  ||||||||||||||||| | ||||||||||||||||| || |||||||  || |||||||| || ||  | ||||| ||||||||||| |  | |||  ||   ||     |  | | |||   |   |  |  |   | ||| || ||    || |  |     |  ||                
ACATGAGGGGCTCATGTTCAGGCAGAACTTCTCGATTAGGTCCTATGAGATCGGGGCCGATAGGACGGCGTCTATAGAAACGCTGATGAACCATTTGCAGgtgaaatattgtgaa---ttttcaggcgtcggattgctcgggctgggcat-cagaacattgaaatgtttttggttttgatgcag----------------

upper sequence: GLYMA04G21910.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g43090.4 (Oryza sativa), 5'ss of exon 3
GCAGGATGGGCTTGTGTTCAGGCAGAACTTCCCCATTAGGTCCTATGAGATTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagcttttgcaaaaaattgctgagaattgcattcagcaatcacg---ataaatataacttttaataaattatta----tagaagttaagtaacttatcacgggtt
 ||||| ||  | ||||| ||||||||||||   ||| ||||||| ||||||||||| |||   || || ||||| ||||| || ||||||||||| ||||| ||   ||||| |    || |   | || ||||   || |   |    |   ||||  ||   ||   |  ||     | | | |||  |||  | |  | |   
CCAGGACGGTATGGTGTTTAGGCAGAACTTCATGATTCGGTCCTACGAGATTGGCGCTGATCGTACAGCTTCTATAGAGACATTGATGAATCATTTACAGgtaagtggttgcacatt-ctgtttttagtttcatttctcatttcagcattttgttatagattcgtatgtctctttcaagctggcaattatttaaaattttgcag---

upper sequence: GLYMA04G21910.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G406603_T02 (Zea mays), 5'ss of exon 2
GCAGGATGGGCTTGTGTTCAGGCAGAACTTCCCCATTAGGTCCTATGAGATTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagcttttgcaaaaaattgctgagaattgcattcagcaatcacgataaatataacttttaataaattattatagaagttaagtaacttatcacgggtt
 || ||||||||  ||||||||||||||||| |||||||||||||||||||||| || ||||  || || ||||| |||||  | ||||| ||||||||||| |  |  |     || ||     |  |   |||  | |     |    ||   ||  | || || ||   ||   |   |                  
ACATGATGGGCTCATGTTCAGGCAGAACTTCTCCATTAGGTCCTATGAGATTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAGgtaaaatgatttgttaattt-tgaggtgtgagattttgtagctgagg---attggacgatgaaaaagtttggatttgatccag-----------------

upper sequence: GLYMA04G21910.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G079308_T01 (Zea mays), 5'ss of exon 9
GCAGGATGGGCTTGTGTTCAGGCAGAACTTCCCCATTAGGTCCTATGAGATTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagcttttgcaaaaaattgctgagaattgcattcagcaatcacgataaatataacttttaataaattattatagaagttaagtaacttatcacgggtt
 || ||||| ||  |||||| |||||||||| |||||||||||||||||||||| || ||||  || || ||||| |||||  | ||||| ||||||||||| ||  ||||  | |      ||||   ||   |  |   |  |     ||   ||| | || || ||   ||   |   |                  
ACATGATGGCCTCATGTTCAAGCAGAACTTCTCCATTAGGTCCTATGAGATTGGGGCTGATAGGACGGCATCTATAGAGACAATGATGAACCATTTGCAGgtaaggatttgttacat----ttgaggtgtgagatt-gttgtggctgaggattggactatgaaaaagtttggatttgatccag-----------------

upper sequence: GLYMA04G21910.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G829544_T01 (Zea mays), 5'ss of exon 2
GCAGGATGGGCTTGTGTTCAGGCAGAACTTCCCCATTAGGTCCTATGAGATTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtca-gcttttgcaaaaaattgctgagaattgcattcagcaatcacgataaatataacttttaataaattattatagaagttaagtaacttatcacgggtt-----
 ||||||||||| || || ||||| ||||||   ||| |||||||||||||||| ||||||   || || ||||| ||||| |||||||||||||| ||||| |  |  |   |  |     || ||  ||   | |     |   | |  || ||   ||     |  |  | |    ||     |  ||||   |  ||     
TCAGGATGGGCTGGTTTTTAGGCAAAACTTCTGGATTCGGTCCTATGAGATTGGTGCCGATCGTACGGCTTCTATAGAGACATTAATGAATCATTTACAGgtaacacaatgataccacgaaacttagt-ttctttaccctttttttgctctatttactattggtccatcttgtttcactgtgcctcactttattttgaattttcag

upper sequence: GLYMA04G21910.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G007489_T01 (Zea mays), 5'ss of exon 2
GCAGGATGGGCTTGTGTTCAGGCAGAACTTCCCCATTAGGTCCTATGAGATTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagcttttgcaaaaaattgctgagaattgcattcagcaatcacgataaatataacttttaataaattattatagaagttaagtaacttatcacgggtt-----
 ||||||||| | ||||| ||||| ||||||   ||| |||||||||||||||| ||||||   || || ||||| ||||| ||||||||||| || ||||| |     ||  |  |      |    |||  | |     |  |  ||  ||  | |  |  ||  || ||  |   ||        ||||   |  ||     
CCAGGATGGGATGGTGTTTAGGCAAAACTTCATTATTCGGTCCTATGAGATTGGTGCCGATCGTACTGCTTCTATAGAGACATTAATGAATCACTTACAGgtgacacaatgatactacaaaacgtagtttgtctgccttttttgctctatttactattggtc-tatcttgtttcatt-gtgcctcgctttattttgaattttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193642753|gb|FK593367.1|FK593367
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208080272|gb|GD877104.1|GD877104
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208219670|gb|GE016596.1|GE016596
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|209700483|gb|BW664458.1|BW664458
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGG
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGG
EST: gi|193617424|gb|FK568818.1|FK568818
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|298165029|gb|HO011078.1|HO011078
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208297936|gb|GE095783.1|GE095783
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAACCATGTTAA
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAA
EST: gi|193533373|gb|FK490659.1|FK490659
EST:     CGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: CGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208188585|gb|GD983213.1|GD983213
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208093908|gb|GD892387.1|GD892387
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|207717934|gb|GD698288.1|GD698288
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAACCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|207782709|gb|GD751466.1|GD751466
EST:     TTGGCGCCGACAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208068275|gb|GD866601.1|GD866601
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|207773351|gb|GD744461.1|GD744461
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208283786|gb|GE082416.1|GE082416
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCTTTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGACTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208311494|gb|GE102178.1|GE102178
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208150010|gb|GD951626.1|GD951626
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|193429063|gb|FK393199.1|FK393199
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|207755470|gb|GD726579.1|GD726579
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208045819|gb|GD844679.1|GD844679
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|207810531|gb|GD781640.1|GD781640
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208079193|gb|GD877033.1|GD877033
EST:     TTGGCGCCGATAAAACCGTGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208144759|gb|GD941754.1|GD941754
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208085044|gb|GD883608.1|GD883608
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208148567|gb|GD946809.1|GD946809
EST:     ACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: ACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|193425405|gb|FK386508.1|FK386508
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|193454368|gb|FK418667.1|FK418667
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTG
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTG
EST: gi|193554436|gb|FK513481.1|FK513481
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208280534|gb|GE075818.1|GE075818
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|193541683|gb|FK498399.1|FK498399
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|208259954|gb|GE059354.1|GE059354
EST:     TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
EST: gi|193696852|gb|FK638008.1|FK638008
EST:     TAAAACCGACGTCTATCGAGACTTTAATGAATCATTTGCAG                         GAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT
genomic: TAAAACCG-CGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagctttt ... ttccaaacagGAGACTGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGTGATGGATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGGATGGGCTTGTGTTCAGGCAGAACTTCCCCATTAGGTCCTATGAGATTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagcttttgcaaaaaattgctgagaattgcattcagcaatcacgataaatataacttttaataaattattatagaagttaagtaacttatcacgggtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaaaa