1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTTTGGGGCCTTATTCCACCAGCATAAAAAAAGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtgaaattgccgttctctctctctctctctctaatcccaaccgtaacatctgatacaattgtattcacttattgaaatcctgttggaagttttt...
species | Glycine max |
transcript | GLYMA03G42370.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: NGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGEST: gi|213602675|gb|DB956611.1|DB956611
genomic: AGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
EST: NGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGEST: gi|213589227|gb|DB957759.1|DB957759
genomic: AGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
EST: NGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGEST: gi|151405667|gb|EV275481.1|EV275481
genomic: AGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
EST: NGCCGAGAAGGAGATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGEST: gi|209702899|gb|BW667434.1|BW667434
genomic: AGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
EST: NGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGEST: gi|208155594|gb|GD951999.1|GD951999
genomic: AGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
EST: CAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGEST: gi|208228908|gb|GE024272.1|GE024272
genomic: CAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
EST: AAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGEST: gi|193409954|gb|FK370747.1|FK370747
genomic: AAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
EST: -GCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTEST: gi|213600299|gb|DB970277.1|DB970277
genomic: AGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACT
EST: NGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGEST: gi|208196800|gb|GE001032.1|GE001032
genomic: AGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
EST: AAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGEST: gi|213611619|gb|DB969007.1|DB969007
genomic: AAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
EST: NGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
genomic: AGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTGGGGCCTTATTCCACCAGCATAAAAAAAGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtgaaattgccgttctctctctctctctctctaatcccaaccgtaacatctgatacaattgtattcacttattgaaatcctgttggaagttttt
- - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAA