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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGAGAGTGACCGAGGAGTTTCATGTACTTTTGGAGCTGATGTAGTTGCAGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAGgtaaacctctcatttcatttttgcagattgaacaggttatagaatagaagttgggaatccatatttgtggtattcttataggagcgattctaattgattg...

Basic information

species Glycine max
transcript GLYMA03G39440.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39440.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G27840.2 (Arabidopsis thaliana), 5'ss of exon 2
GGCAGAGAGTGACCGAGGAGTTTCATGTACTTTTGGAGCTGATGTAGTTGCAGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAGgtaaacctctcatttcatttttgcagattg---aacaggttata-------gaatagaagttg------ggaatccatatttgtggtattcttataggagcgattctaattgattg-------------
||| || ||||| |||||  | || || |||||||||||||||  ||| || ||||| |||||||| ||||| ||||| ||  ||||| |||| ||||||||||| |   ||   | |  | | |   ||   ||  | |  |        || |||   |||          |  | | || | | |||||||    | ||    |   | || |             
GGCTGATAGTGATCGAGGTATCTCTTGCACTTTTGGAGCTGATAAAGTCGCTGAGTTCTTGGATAAGAATGATCTTGACCTCATTTGCCGAGGCCATCAGgtaaaacaaacaagacctcctcgaaacctgtgaaattgttcttgatggtttgattagcgtttgtccataaagctagagactttttgaattcttaccatatcggacatgtgtaatggttttgtgatgcag

upper sequence: GLYMA03G39440.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G05580.1 (Arabidopsis thaliana), 5'ss of exon 2
GGCAGAGAGTGACCGAGGAGTTTCATGTACTTTTGGAGCTGATGTAGTTGCAGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAGgtaaacct-ctcatttcatttttgcagattgaacaggttatagaatagaagttgggaa--tccatatttgtggtattcttataggagcgattctaattgattg----------------------------------------------------
| | || || || |||||  | || || || |||||||| |||||||| || || ||||||||||| ||||| || |||||  |||||||||| |||||||||||    ||    |  |  |   |  | ||||    |     |     || |  |   |  | |||||| |||| ||| |      |    |||  ||                                                       
GACTGATAGCGATCGAGGTATCTCCTGCACGTTTGGAGCCGATGTAGTCGCTGACTTTTTGGATAAGAATGATCTCGATCTCATTTGCAGAGGCCATCAGgtaaatagacttccatagtgatcaaaactagaaccaaatggtccaactctgtagaaatgtttgacatttgttgtat-cttgtgaatatgggcataaaggaaaagacttttatgagaaccttccaagatattgacttgtgagggacgtgtttgcag

upper sequence: GLYMA03G39440.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0060g01750.t01 (Vitis vinifera), 5'ss of exon 2
GGCAGAGAGTGACCGAGGAGTTTCATGTACTTTTGGAGCTGATGTAGTTGCAGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAGgtaaacctctcatttcatttttgcagattgaacaggttatagaatagaagttgggaatccatatttgtggtattcttataggagcgattctaattgattg------
|||||| ||||| ||||| ||||| ||||| ||||||||||||   ||||| || |||||||| || ||||| ||||||||  ||||| |||| |||||||||| |      | |||||      | ||||  |  ||     ||  |  ||    |      | | |    || || || |||| || | |||| |||       
GGCAGATAGTGATCGAGGTGTTTCTTGTACCTTTGGAGCTGATAAGGTTGCTGAATTTTTGGACAAGAATGATCTTGATCTCATTTGCCGAGGTCATCAGgtaagcaaagt-tctcattcacaatgcttgataacattc----atgtacttttcctactttgttctatatagttgttttaagagc-atcccaattcattaaagcca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269934|gb|BM886190.1|BM886190
EST:     CAGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAG                         GTTGTGGAGGATGGATATGAGTTTTTTGCTAAAAGAAGATTAGTCACGATA
genomic: CAGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAGgtaaacctct ... ttcttaatagGTTGTGGAGGATGGATATGAGTTTTTTGCTAAAAGAAGATTAGTCACGATA
EST: gi|31560890|gb|CD486728.1|CD486728
EST:     CAGAGTTTTCGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAG                         GTTGTGGAGGATGGATATGAGTTTCTTGCTAAAAGAAGATTAGTCACGATA
genomic: CAGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAGgtaaacctct ... ttcttaatagGTTGTGGAGGATGGATATGAGTTTTTTGCTAAAAGAAGATTAGTCACGATA
EST: gi|13791695|gb|BG654286.1|BG654286
EST:     CAGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAG                         GTTGTGGAGGATGGATATGAGTTTTTTGCTAAAAGAAGATTAGTCACGATA
genomic: CAGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAGgtaaacctct ... ttcttaatagGTTGTGGAGGATGGATATGAGTTTTTTGCTAAAAGAAGATTAGTCACGATA