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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcacttttcattctcttctcttttatttctaacttattattattatgatggtgatggtgatgttgatgatgatgtaacag

Basic information

species Glycine max
transcript GLYMA03G37170.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37170.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0060g02240.t01 (Vitis vinifera), 5'ss of exon 2
CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcacttttcattctcttctcttttatttctaacttattattattatgatggtgatggtgatgttgatgatgatgtaacag-----------------
||||||||||| || ||||||||||| ||||| |||||||||| ||     | ||   ||| |  | || |  || |||||| |   |   |   ||   |   |||  |  |   |||| |                      
CTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATGgtaagg-gttgtttcctctgtgttattgtcgttataactt-tagctgcaactgtgaataacatgagttgaacactgattttttccctttttttcagaaacca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298181980|gb|HO026155.1|HO026155
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|22541271|gb|BU091114.1|BU091114
EST:     ACGACATGCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: ACGACATGCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|4306331|gb|AI443889.1|AI443889
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|298177576|gb|HO027243.1|HO027243
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|15285536|gb|BI469427.1|BI469427
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|20449577|gb|BQ253701.1|BQ253701
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|298188838|gb|HO035531.1|HO035531
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|298167205|gb|HO010644.1|HO010644
EST:     TTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAGTTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|15287452|gb|BI471343.1|BI471343
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|20449634|gb|BQ253758.1|BQ253758
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|11689790|gb|BF597466.1|BF597466
EST:     GCTTACTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACCGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: GCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|6227965|gb|AW156627.1|AW156627
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|298165378|gb|HO011427.1|HO011427
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|12773301|gb|BG238228.1|BG238228
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|298181583|gb|HO025758.1|HO025758
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|298177163|gb|HO027058.1|HO027058
EST:     CTTCCTCTTTCCCTTCTCAAGATTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|298169719|gb|HO021079.1|HO021079
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|298190031|gb|HO032152.1|HO032152
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|298180399|gb|HO025600.1|HO025600
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|298195412|gb|HO039243.1|HO039243
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|6724523|gb|AW308922.1|AW308922
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|24206235|gb|BU965488.1|BU965488
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC