1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgagaatctcgctgcctttttttcccctgcttgttttacattatttttttgctttaatttagattgtaagtaattgtgttgttctttatgtcattag
species | Glycine max |
transcript | GLYMA02G46620.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|17153736|gb|BM143669.1|BM143669
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|31468894|gb|CD410922.1|CD410922
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGAAGAAAGCTTTTAAAGGATCCTTCGTAGAAGCAGGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|26047850|gb|CA784505.1|CA784505
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|298181833|gb|HO026008.1|HO026008
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|298174609|gb|HO017832.1|HO017832
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|9898882|gb|BE607850.1|BE607850
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|298184523|gb|HO029736.1|HO029736
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAATG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|31311953|gb|CD397156.1|CD397156
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|298178521|gb|HO024256.1|HO024256
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGGAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|298181875|gb|HO026050.1|HO026050
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGAAGAAAGGTTTTAAAGGATCCTTTATAGAAGCAGGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|7925046|gb|AW831072.1|AW831072
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|6071305|gb|AW100692.1|AW100692
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAG ACAATTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|24135852|gb|BU926362.1|BU926362
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|298173707|gb|HO017043.1|HO017043
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: GAAGAAAGTGTTTTAAAGGATCCTTTGTAGAAGCATGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|15337011|gb|BI497667.1|BI497667
genomic: GAAGAAAG-GTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAEST: gi|18041339|gb|BM309633.1|BM309633
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
EST: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAG ACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
genomic: AGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgag ... atgtcattagACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGGTCTTATGCAAAGgtacattgagaatctcgctgcctttttttcccctgcttgttttacattatttttttgctttaatttagattgtaagtaattgtgttgttctttatgtcattag
- - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG