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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCATGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGgtgagagctctgtctttctgtcttttctaaacgcttatgatgaattttcaatttgaatgtgtttgtgctaattcatggattaaagtttaggtttaagtgaagctaatacctgttttgcttttgtttcag

Basic information

species Glycine max
transcript GLYMA02G46200.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208146958|gb|GD950589.1|GD950589
EST:     CGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG                         TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTT
genomic: CGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGgtgagagctc ... tttgtttcagTTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTT
EST: gi|207815546|gb|GD788697.1|GD788697
EST:     TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG                         TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
genomic: TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGgtgagagctc ... tttgtttcagTTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
EST: gi|13251924|gb|BG362827.1|BG362827
EST:     TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG                         TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
genomic: TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGgtgagagctc ... tttgtttcagTTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
EST: gi|213615236|gb|DB965044.1|DB965044
EST:     TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG                         TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
genomic: TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGgtgagagctc ... tttgtttcagTTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
EST: gi|213616511|gb|DB965709.1|DB965709
EST:     TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG                         TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
genomic: TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGgtgagagctc ... tttgtttcagTTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
EST: gi|209721887|gb|BW680046.1|BW680046
EST:     TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG                         TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
genomic: TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGgtgagagctc ... tttgtttcagTTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
EST: gi|193557293|gb|FK511606.1|FK511606
EST:     TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG                         TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
genomic: TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGgtgagagctc ... tttgtttcagTTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
EST: gi|120491274|gb|EH219441.1|EH219441
EST:     TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG                         TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
genomic: TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGgtgagagctc ... tttgtttcagTTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
EST: gi|193697198|gb|FK634882.1|FK634882
EST:     TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG                         TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
genomic: TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGgtgagagctc ... tttgtttcagTTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
EST: gi|209726695|gb|BW672449.1|BW672449
EST:     TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG                         TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
genomic: TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGgtgagagctc ... tttgtttcagTTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
EST: gi|298170020|gb|HO018644.1|HO018644
EST:     TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG                         TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
genomic: TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGgtgagagctc ... tttgtttcagTTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
EST: gi|208053663|gb|GD850580.1|GD850580
EST:     TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG                         TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCT
genomic: TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGgtgagagctc ... tttgtttcagTTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCT
EST: gi|298174924|gb|HO014841.1|HO014841
EST:     TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG                         TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT
genomic: TGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGgtgagagctc ... tttgtttcagTTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCT