1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ACAAGGACAGGGAATTATCGGAAGCACAGGCTGAGATCAAAGCCTTGAGGCTCTCTGAACGGCTTAGAGAAAAAGCCGTTGAAGAGgttaccactgatttttcaattattgttaattattgctgttctttgtttgcattgattgatggtgtctttttgtgaagattgtcatgaattatccgttttt...
species | Glycine max |
transcript | GLYMA02G09390.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAAAGCCTTGAGGCTCTCTGAACGGCTTAGAGAAAAAGCCGTTGAAGAG CTGACAGAAGAACTGTCAAAGGTTGACGAGAAGCTAAAACTAACGGAGTCTEST: gi|193315901|gb|FK281057.1|FK281057
genomic: TCAAAGCCTTGAGGCTCTCTGAACGGCTTAGAGAAAAAGCCGTTGAAGAGgttaccactg ... ttgtgtttagCTGACAGAAGAACTGTCAAAGGTTGACGAGAAGCTAAAACTAACGGAGTCT
EST: TCAAAGCCTTGAGGCTCTCTGAACGGCTTAGAGAAAAAGCCGTTGAAGAG CTGACAGAAGAACTGTCAAAGGTTEST: gi|193528136|gb|FK487670.1|FK487670
genomic: TCAAAGCCTTGAGGCTCTCTGAACGGCTTAGAGAAAAAGCCGTTGAAGAGgttaccactg ... ttgtgtttagCTGACAGAAGAACTGTCAAAGGTT
EST: TCAAAGCCTTGAGGCTCTCTGAACGGCTTAGAGAAAA-GCCGTTGAAGAG CTGACAGAAGAACTGTCAAAGGTTGACGAGAAGCTAAAACTAACGGAGTCTEST: gi|193380706|gb|FK347431.1|FK347431
genomic: TCAAAGCCTTGAGGCTCTCTGAACGGCTTAGAGAAAAAGCCGTTGAAGAGgttaccactg ... ttgtgtttagCTGACAGAAGAACTGTCAAAGGTTGACGAGAAGCTAAAACTAACGGAGTCT
EST: TCAAAGCCTTGAGGCTCTCTGAACGGCTTAGAGAAAAAGCCGTTGAAGAG CTGACAGAAGAACTGTCAAAGGTTG
genomic: TCAAAGCCTTGAGGCTCTCTGAACGGCTTAGAGAAAAAGCCGTTGAAGAGgttaccactg ... ttgtgtttagCTGACAGAAGAACTGTCAAAGGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAGGACAGGGAATTATCGGAAGCACAGGCTGAGATCAAAGCCTTGAGGCTCTCTGAACGGCTTAGAGAAAAAGCCGTTGAAGAGgttaccactgatttttcaattattgttaattattgctgttctttgtttgcattgattgatggtgtctttttgtgaagattgtcatgaattatccgttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA