Sequence
atgc intronic sequence ATGC exonic sequenceGTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTGgtatgtatgaaatataagcatcttgtattgcactttaattttcttaatgaaatcattaagacttcttttatctttcttccag
Basic information
species | Glycine max |
transcript | GLYMA10G33610.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G33610.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os07g26210.2 (Oryza sativa), 5'ss of exon 2
GTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTGgtatgtatgaaat--ataagcatctt----gtattg----cactttaa-ttttcttaatgaaatcattaagacttcttttatctttcttccag-------
|||||| |||| | || |||||||||||||| || |||||||||||||| ||||||| |||||||||| | ||| || || | ||| || || ||| || ||||| |||| ||| | || | |
GTACAAGGTTACTCTCTTCAATGAGCTGTACTTCCTAGTTGCTGGAGGAACTGTTTGGATAGgtatgtatgtcttgcataggcttcctactagtactgttttcattttcccttctcttaggcaaattatttttgcaagccacatagtaaactcgagggattt
upper sequence: GLYMA10G33610.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os07g26210.1 (Oryza sativa), 5'ss of exon 12
--------------------------------------GTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTGgtatgtatga--aatataagcatctt----gtattg----cactttaa-ttttcttaatgaaatcattaagacttcttttatctttcttccag-------
|||||| |||| | || |||||||||||||| || |||||||||||||| ||||||| |||||||||| ||| || || | ||| || || ||| || ||||| |||| ||| | || | |
TAATATCCTTGTGCTTTCTGGTGCTTAAATTCTTGCAGGTACAAGGTTACTCTCTTCAATGAGCTGTACTTCCTAGTTGCTGGAGGAACTGTTTGGATAGgtatgtatgtcttgcataggcttcctactagtactgttttcattttcccttctcttaggcaaattatttttgcaagccacatagtaaactcgagggattt
upper sequence: GLYMA10G33610.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G105922_T01 (Zea mays), 5'ss of exon 7
GTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTGgtatgtatg---aaatataagcatcttgtattgcactttaattttctta-atgaaatcattaag-acttcttttatctttcttccag--------------
|||||| ||||| | ||||||||||||||||| || |||||||| ||||| |||||||||||| || |||| | | | | | | |||||| | || | | ||| | | | ||| |
GTACAAGATTACACTCTTTAATGAGCTGTACTTCCTAGTTGCTGGTGGAACCGTTTGGATTGgtactgatctctgcatattgttacacttt-tccctttccaattttgccatattaggttggcaagtaacacaatgggcttgaatgatattggtatacacatt
upper sequence: GLYMA10G33610.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv05s0051g00910.t01 (Vitis vinifera), 5'ss of exon 13
GTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTGgtatgtatgaaatataagcatcttgtattgcactttaattt-tcttaatgaaatcattaagacttcttttatctt-tcttccag------------------
|||||| || || ||||||||||| || |||||| | |||||||| || ||| ||||||||||||| || | ||| ||| || || || || | || |||| || |||||| || |||| |
GTACAAGTTCACGTTATTTAATGAACTCTACTTTTTGGTTGCTGGTGGGACAGTTTGGATTGgtattcatctatactaacttcattgctttacatcttgatgagtagcaaagaaacaat--gtacttctagcattgcatcttatatgagcaatcaccccacctcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254318669|gb|GR828613.1|GR828613EST: ATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTG ACTCTCCTGTGCTATCTTCGAATATGCGGAATGACCAGGATCGAGTAAGGG
genomic: ATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTGgtatgtatga ... tttcttccagACTCTCCTGTGCTATCTTCGAATATGCGGAATGACCAGGATCGAGTAAGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTGgtatgtatgaaatataagcatcttgtattgcactttaattttcttaatgaaatcattaagacttcttttatctttcttccag
- - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - GGAGGA