1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CTGAGAGGAGGGTCGTTCCGGGTTCAGGTGCTGAAGAGTTCAAGTTTGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGgtaatcattcttaatctgctgcttcttattgtttaaactaatatttttgtaactgaaactactaagcttgttttatggtaaaacttgctaacaaaacaatttgttctgttcag
species | Glycine max |
transcript | GLYMA07G03930.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: TGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATG GTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATCEST: gi|192309363|gb|FK000571.1|FK000571
genomic: TGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGgtaatcattc ... ttctgttcagGTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATC
EST: TGCTTCCTCCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATG GTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATCEST: gi|22927461|gb|BU544600.1|BU544600
genomic: TGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGgtaatcattc ... ttctgttcagGTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATC
EST: TGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATG GTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATCEST: gi|298165294|gb|HO011343.1|HO011343
genomic: TGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGgtaatcattc ... ttctgttcagGTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATC
EST: TGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATG GTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTGTATTGAAAATCEST: gi|213593954|gb|DB983162.1|DB983162
genomic: TGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGgtaatcattc ... ttctgttcagGTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATC
EST: TGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATT AACCAATTGCAGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATCEST: gi|9984928|gb|BE659036.1|BE659036
genomic: TGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGgtaatcattc ... ttctgttcagGTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATC
EST: TGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATG GTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATCEST: gi|192309362|gb|FK000570.1|FK000570
genomic: TGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGgtaatcattc ... ttctgttcagGTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATC
EST: TGCTTCCTCCATGTCTGTGACC-TCAGCTGTGATCATCGTGTTATAGATG GTGCAATTGGTGCCGAATGGTTAAA-GCATTCAAAG-CTATATTEST: gi|8827585|gb|BE211315.1|BE211315
genomic: TGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGgtaatcattc ... ttctgttcagGTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATT
EST: TGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATG GTGCAATTGGTGCCGAATAGTTAAAAGCATTCAAAGGCTATATGGAGAATC
genomic: TGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGgtaatcattc ... ttctgttcagGTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAGAGGAGGGTCGTTCCGGGTTCAGGTGCTGAAGAGTTCAAGTTTGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGgtaatcattcttaatctgctgcttcttattgtttaaactaatatttttgtaactgaaactactaagcttgttttatggtaaaacttgctaacaaaacaatttgttctgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG