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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGAAGTTGAGCTCATGTGATTTATGTGAGATTGCCCGTAATTCAGTTTATCAATCAGGTTTCTCACATGCTTTAAAGgtacatttctcgtcctgattctcttgtgaatgaaatcctctacccctcaatgcaattttttaaattcttatcctgacatgtgtccaggggcacccagagt...

Basic information

species Glycine max
transcript GLYMA01G29470.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G29470.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 17
GTGTGGAAGTTGAGCTCATGTGATTTATGTGAGATTGCCCGTAATTCAGTTTATCAATCAGGTTTCTCACATGCTTTAAAGgtacatt-tctcgtcctgattctcttgtgaatgaaatcctctacccctcaatgcaattttttaaattcttatcctgacatgtgtccaggggcacccagagt
|| |||| | |||| ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||| | ||||||  |  |||  |  |||     |  |      |       |  |   || || | | | ||        || |||  |       |  |  |      |
GTATGGAGGCTGAGTTCATGCGATTTATGTGAAATTGCCCGTAATTCAGTCTACCAATCAGGTTTCTCACATGCTCTGAAGgtaattaatcttattttgaagtgataataggcatagctaatgattctggaaagccagtgtgtag-cataggtcatgagtttgagttggaagttcttttcct

upper sequence: GLYMA01G29470.1 (Glycine max), 5'ss of exon 18
lower sequence: PP1S307_76V6.1 (Physcomitrella patens), 5'ss of exon 17
GTGTGGAAGTTGAGCTCATGTGATTTATGTGAGATTGCCCGTAATTCAGTTTATCAATCAGGTTTCTCACATGCTTTAAAGgtacatttctcgtcctgattctcttgtgaatgaaatcctctacccctcaatgcaattttttaaattcttatcctgacatgtgtccaggggcacccagagt----------------------------------------------------------------------------------------------
||||||||||||||  | |||||| | |||||||||||  | ||||||||||||||||| || || || ||||  |  || ||   |  |   || |    |     |     || |   | |   | || || ||  ||  |||     ||       |||  ||        | | | |                                                                                              
GTGTGGAAGTTGAGTGCCTGTGATCTTTGTGAGATTGCAAGAAATTCAGTTTATCAATCTGGGTTTTCTCATGAGTCCAAAgtgagtggcatttctttggccctggattggc-aagtttacaatttcacattggaaaattaaaaacatgcatggcatgctgttaccttctatgactatattataacattaacttgtcaactcaatcacttatgataataaataaataaataaataaataaaaacaacaacaacaatacatagatttacaattcag

upper sequence: GLYMA01G29470.1 (Glycine max), 5'ss of exon 18
lower sequence: PP1S77_89V6.1 (Physcomitrella patens), 5'ss of exon 17
GTGTGGAAGTTGAGCTCATGTGATTTATGTGAGATTGCCCGTAATTCAGTTTATCAATCAGGTTTCTCACATGCTTTAAAGgtacatttctcgtcctgatt--ctcttgtgaatgaaatcctc----tacccctcaatgcaattttttaaattct-----tatcctga----catgtgtccaggggcacccagagt---------------------
||||||||| ||||||| |||||  | ||||| ||||| || ||||| ||||||||||| ||||||   |||     |||||||  |  ||| |||| |||   | | ||| ||     | ||    |    ||  |    |||| || ||| ||     |||  |||    | |   |     | | | |  | |                     
GTGTGGAAGCTGAGCTCCTGTGACCTCTGTGAAATTGCACGCAATTCTGTTTATCAATCGGGTTTCAATCATAGAACAAAGgtatgtc-ctcttcctaattgattttagtgcattgtcacgtcaggctggttctttacaagatttattcaatcctgtagatatggtgattggcgtaaatttcacgtcgctctaactattcgactctgactgatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26267857|gb|CA818920.1|CA818920
EST:     AGATTGCCCGTAATTCAGTTTATCAATCAGGTTTCTCACATGCTTTAAAG                         TCACATTGGATTGGTAAGGAGTACTACAAGAGTGGGCCACGCGGAAATGAC
genomic: AGATTGCCCGTAATTCAGTTTATCAATCAGGTTTCTCACATGCTTTAAAGgtacatttct ... cttgttttagTCACATTGGATTGGTAAGGAGTACTACAAGAGTGGGCCACGCGGAAATGAC
EST: gi|254332341|gb|GR846386.1|GR846386
EST:     AGATTGCCCGTAATTCAGTTTATCAATCAGGTTTCTCACATGCTTTAAAG                         TCACATTGGATTGGTAAGGAGTACTACAAGAGTGGGCCACGCGGAAATGAC
genomic: AGATTGCCCGTAATTCAGTTTATCAATCAGGTTTCTCACATGCTTTAAAGgtacatttct ... cttgttttagTCACATTGGATTGGTAAGGAGTACTACAAGAGTGGGCCACGCGGAAATGAC