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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTACCAAGTAGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCTGGAACAGgttttatacctttttcccattgttcattattccttgagggtttgatgatttcatgtttgttcagttactaatacacaactcgaactttttcttctcag

Basic information

species Glycine max
transcript GLYMA20G21330.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G21330.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv05s0049g01840.t01 (Vitis vinifera), 5'ss of exon 17
GATTTACCAAGTAGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCTGGAACAGgttttatacctt--tttcccattgttcattattccttgagggtttgatgatttcatgtttgttcagtta--ctaatacacaactcgaac--tttttcttctcag-----------------------------------------
  |||||||||| || ||||| ||||| || ||||||||||||||||| ||||||||||| ||||| |||||||||    |||   || | ||  |   | |  | || |   |   || || |||  ||| |   | |   |||  |  |  |    ||  | ||   | | ||                                         
AGTTTACCAAGTTGCCAATGTAAAATCGGAGTGGAACTGTATCAAAACATTCCCTGATTTGTCTGGCACAGgttttgcctcttatcttgcaatcatgtgtca--catttatcttgcaatcatgtcacatttatcttgctgtcctatcattcttccattacgatcttcagttttagttacagtttccttgatggatgacttctggtcctgcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317196|gb|GR826141.1|GR826141
EST:     GAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCTGGAACAG                         GGAAGAACACGTGTGTAAAATTTGGTCCAGATTCTAAATACATAGCTGTGG
genomic: GAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCTGGAACAGgttttatacc ... ttcttctcagGGAAGAACACGTGTGTAAAATTTGGTCCAGATTCTAAATACATAGCTGTGG
EST: gi|151405711|gb|EV275525.1|EV275525
EST:     GAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCTGGAACAG                         GGAAGAACACGTGTGTAAAATTTGGTCCAGATTCTAAATACATAGCTGTGG
genomic: GAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCTGGAACAGgttttatacc ... ttcttctcagGGAAGAACACGTGTGTAAAATTTGGTCCAGATTCTAAATACATAGCTGTGG
EST: gi|58023351|gb|CX710092.1|CX710092
EST:     GAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCTGGAACAG                         GGAAGAACACGTGTGTAAAATTTGGTCCAGATTCTAAATACATAGCTGTGG
genomic: GAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCTGGAACAGgttttatacc ... ttcttctcagGGAAGAACACGTGTGTAAAATTTGGTCCAGATTCTAAATACATAGCTGTGG
EST: gi|7685202|gb|AW755850.1|AW755850
EST:     GAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCTGGAACAG                         GGAAGAACACGTGTGTAAAATTTGGTCCAGATTCTAAATACATAGCTGTGG
genomic: GAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCTGGAACAGgttttatacc ... ttcttctcagGGAAGAACACGTGTGTAAAATTTGGTCCAGATTCTAAATACATAGCTGTGG
EST: gi|58023646|gb|CX710387.1|CX710387
EST:     GAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCTGGAACAG                         GGAAGAACACGTGTGTAAAATTTGGTCCAGATTCTAAATACATAGCTGTGG
genomic: GAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCTGGAACAGgttttatacc ... ttcttctcagGGAAGAACACGTGTGTAAAATTTGGTCCAGATTCTAAATACATAGCTGTGG