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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAGgtaaatttatagtcttcttgtgcttaggttgttacataaaattgagcacaacactaattaggtgattctatgaaccag

Basic information

species Glycine max
transcript GLYMA13G40010.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40010.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv06s0004g02720.t01 (Vitis vinifera), 5'ss of exon 17
AAATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAGgtaaatttatagtcttcttgtgcttaggttgttacataaaattgagcacaacactaattaggtgattctatgaaccag-------------------------------
|||||||| || || || || ||||||||||| |||||||||||||| |||||  |||     |  | ||    ||   || |          |    |       |  | | |  |   | ||||||                                
AAATATGCGGCGCAAGGTGGCCCTGAGTTCTTCTTCATTGTAAACATCCAGgtggattctctcttctgtttaatttgctttttctttcttttatttttattttctgatcttgctattgacaagaaccaagatatttaccacaaatattacaatgaaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236466|gb|BE805354.1|BE805354
EST:     AATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAG                         GTTCCAGGTTCTACTACATATAGCCTAGCACTATACTATATGATGAATACT
genomic: AATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAGgtaaatttat ... tatgaaccagGTTCCAGGTTCTACTACATATAGCCTAGCACTATACTATATGATGAATACT
EST: gi|51341316|gb|CO982633.1|CO982633
EST:     AATATGCATCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAG                         GTTCCAGGTTCTACTACATATAGCCTAGCACTATACTATATGATGAATACT
genomic: AATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAGgtaaatttat ... tatgaaccagGTTCCAGGTTCTACTACATATAGCCTAGCACTATACTATATGATGAATACT
EST: gi|27446108|gb|CA953231.1|CA953231
EST:     AATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAG                         GTTCCAGGTTCTACTACATATAGCCTAGCACTATACTATATGATGAATACT
genomic: AATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAGgtaaatttat ... tatgaaccagGTTCCAGGTTCTACTACATATAGCCTAGCACTATACTATATGATGAATACT