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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGCTCATTCAGAGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGGgtatgttaaatttataaatttatgttacattttcttacttgtgactcgtgatgttgattgtggaatgtaagagtggcgagcattcgcacattataaacca...

Basic information

species Glycine max
transcript GLYMA11G12120.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12120.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os03g14690.1 (Oryza sativa), 5'ss of exon 17
TCTTGCTCATTCAGAGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGGgtatgttaaatttataaatttatgttacattttcttacttgtgactcgtgatgttgattgtgga-atgtaagagtggcgagcattcgcaca-ttataaacca
|||||| || || ||||| ||||||||||||||||| ||||||||  |  | || |  ||||| |   || | | ||   |   |  |    || |     |  |||   || |   | |  |  || |     |       ||  ||    || ||     
TCTTGCACACTCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGgtaag---aactaagaagcctccctctccgcctcctctccttttctccctatctatgtagccgctatctggagctcatttttatgtgccttcttgtag----

upper sequence: GLYMA11G12120.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv03s0038g00290.t01 (Vitis vinifera), 5'ss of exon 17
TCTTGCTCATTCAGAGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGGgtatgttaaatttataaatttatgttac-attttcttacttgtgactcgtgatgttgattgtgga---atgtaagagtggcgagcattcgcacattataaacca
||||||||| |||||||||||||||||||||||||||||||| ||  |  |||| |||||||| |||||  || |    ||||| |||   |||  |  |  ||       ||| |   | || |    ||| |  || | ||    | |   |   | || ||
TCTTGCTCACTCAGAGTTATCAAGTGTATTCTATGAGAAGGTCCTCCTCCTGGCTTGGGGgtaagttaatatttt----ttatgctaccgctttgctcttaatgcagtcaaatgctacctttgaacttgtgtgatggtagtgaattattgatgagccttaagca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924839|gb|AW830865.1|AW830865
EST:     TCAGAGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGG                         GTACAATAATGTTATTATCCTGATAGTGGGTCTCATTGTCTTCATTTTTGC
genomic: TCAGAGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGGgtatgttaaa ... gatgttacagGTACAATAATGTTATTATCCTGATAGTGGGTCTCATTGTCTTCATTTTTGC
EST: gi|193520417|gb|FK475048.1|FK475048
EST:     TTCTATGAGAAGGTTCTGATGATGGCATGGGG                         GTACAATAATGTTATTATCCTGATAGTGGGTCTCATTGTCTTCATTTTTGC
genomic: TTCTATGAGAAGGTTCTGATGATGGCATGGGGgtatgttaaa ... gatgttacagGTACAATAATGTTATTATCCTGATAGTGGGTCTCATTGTCTTCATTTTTGC
EST: gi|193596028|gb|FK550021.1|FK550021
EST:     AGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGG                         GTACAATAATGTTATTATCCTGATAGTGGGTCTCATTGTCTTCATTTTTGC
genomic: AGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGGgtatgttaaa ... gatgttacagGTACAATAATGTTATTATCCTGATAGTGGGTCTCATTGTCTTCATTTTTGC
EST: gi|209712504|gb|BW653687.1|BW653687
EST:     TCAGAGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGG                         GTACAATAATGTTATTATCCTGATAGTGGGTCTCATTGTCTTCATTTTTGC
genomic: TCAGAGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGGgtatgttaaa ... gatgttacagGTACAATAATGTTATTATCCTGATAGTGGGTCTCATTGTCTTCATTTTTGC
EST: gi|207822639|gb|GD795694.1|GD795694
EST:     TCAGAGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGG                         GTACAATAATGTTATTATCCTGATAGTGGGTCTCATTGTCTTCATTTTTGC
genomic: TCAGAGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGGgtatgttaaa ... gatgttacagGTACAATAATGTTATTATCCTGATAGTGGGTCTCATTGTCTTCATTTTTGC
EST: gi|58021625|gb|CX708366.1|CX708366
EST:     TCAGAGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGG                         GTACAATAATGTTATTATCCTGATAGTGGGTCTCATTGTCTTCATTTTTGC
genomic: TCAGAGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGGgtatgttaaa ... gatgttacagGTACAATAATGTTATTATCCTGATAGTGGGTCTCATTGTCTTCATTTTTGC
EST: gi|254323448|gb|GR840145.1|GR840145
EST:     TCAGAGTTATCAAGTGTATTCTATGAGAAG-TTCTGATGATGGCATGGGG                         GTACA-TAATGTTATTATCCTGATAGTGGGGTCTCATTGTCTTCATTTT-G
genomic: TCAGAGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGGgtatgttaaa ... gatgttacagGTACAATAATGTTATTATCCTGATAGTGGG-TCTCATTGTCTTCATTTTTG
EST: gi|209729739|gb|BW669839.1|BW669839
EST:     TCAGAGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGG                         GTACAATAATGTTATTATCCTGATAGTGGGTCTCATTGTCTTCATTTTTGC
genomic: TCAGAGTTATCAAGTGTATTCTATGAGAAGGTTCTGATGATGGCATGGGGgtatgttaaa ... gatgttacagGTACAATAATGTTATTATCCTGATAGTGGGTCTCATTGTCTTCATTTTTGC