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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTTCAGTTGCACTTAGATCCAGCTAGCAGCAATACTCTTCCCGCAAATGGGTCCATAACCCAAAGTTTGAAAATTACTAATAGCCAACATGGGAAGgtagatggtctttgtaactatagctttactgtaaatatctgtgttctaccatgtccttgtatgatttaaattctaaacagaatgttgatcactggcattt...

Basic information

species Glycine max
transcript GLYMA01G03890.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269554|gb|BM885810.1|BM885810
EST:     ATGGGTCCATAACCCAAAGTTTGAAAATTACTAATAGCCAACATGGGAAG                         AAATCTCTTGTCATGCGTATAAGGATTGCATACAAGATAAATGGCAAGGAT
genomic: ATGGGTCCATAACCCAAAGTTTGAAAATTACTAATAGCCAACATGGGAAGgtagatggtc ... tttttttcagAAATCTCTTGTCATGCGTATAAGGATTGCATACAAGATAAATGGCAAGGAT
EST: gi|22523555|gb|BU082357.1|BU082357
EST:     ATGGGTCCATAACCCAAAGTTTGAAAATTACTAATAGCCAACATGGGAAG                         AAATCTCTTGTCATGCGTATAAGGATTGCATACAAGATAAATGGCAAGGAT
genomic: ATGGGTCCATAACCCAAAGTTTGAAAATTACTAATAGCCAACATGGGAAGgtagatggtc ... tttttttcagAAATCTCTTGTCATGCGTATAAGGATTGCATACAAGATAAATGGCAAGGAT