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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAAGgtgaagaaaactgtctagtactagatttggtgactgttttagaatgtcacagaaaaaatattctcaagcttgttagtttgtcatccctttcattagttttttttttatacctaaaattgatttccagtgcctgttaatttatgcag

Basic information

species Glycine max
transcript GLYMA20G21330.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317196|gb|GR826141.1|GR826141
EST:     GAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAAG                         GATTTACCAAGTAGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTT
genomic: GAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAAGgtgaagaaaa ... atttatgcagGATTTACCAAGTAGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTT
EST: gi|151405711|gb|EV275525.1|EV275525
EST:     CACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAAG                         GATTTACCAAGTAGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTT
genomic: CACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAAGgtgaagaaaa ... atttatgcagGATTTACCAAGTAGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTT
EST: gi|58023351|gb|CX710092.1|CX710092
EST:     GAGTTCGACCACAGTGGGTCNTACNTAGCAGTTGCTGGTTCTGATATAAG                         GATTTACCAAGTAGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTT
genomic: GAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAAGgtgaagaaaa ... atttatgcagGATTTACCAAGTAGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTT
EST: gi|7685202|gb|AW755850.1|AW755850
EST:     GAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAAG                         GATTTACCAAGTAGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTT
genomic: GAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAAGgtgaagaaaa ... atttatgcagGATTTACCAAGTAGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTT
EST: gi|58023646|gb|CX710387.1|CX710387
EST:     GAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAAG                         GATTTACCAAGTAGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTT
genomic: GAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAAGgtgaagaaaa ... atttatgcagGATTTACCAAGTAGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTT