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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGCTGATATTTATACATCTAGGGTGTCAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcagatgactgttttttaatcatataaagcataaggttattgttttgactttaaactgacttagatatgcttctttgtgctctgcag

Basic information

species Glycine max
transcript GLYMA17G04580.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04580.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os01g14810.2 (Oryza sativa), 5'ss of exon 17
ATATGCTGATATTTATACATCTAGGGTGTCAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcagatgact------gttttttaatcatataaagcataaggttattgttttgac--tttaaactgacttagatatgct-tctttgtgctctgcag
|||||||||||| || ||||| ||||| ||||||||| |  ||||||| || |||||||||||||  || || ||||||||| |   |  |||      | ||| |   | | | |      |  || || |  |     |||  ||||| | |||  || | | | |||   ||  | 
ATATGCTGATATATACACATCAAGGGTTTCAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAGgtaattgcaaaactctagatgatttatttcccttttaccttctacatttttatcatagtcatttcgactgattgagacctgatatttctgtttccttaaa

upper sequence: GLYMA17G04580.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G044819_T02 (Zea mays), 5'ss of exon 15
ATATGCTGATATTTATACATCTAGGGTGTCAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcagatgact--gttttttaatcatataaagcataaggttattgttttgactttaaact--gacttagatatgc---ttctttgtgctctgcag--
|||||||||||| || ||||| ||||| ||||||||| || | ||||| || |||||||||||||  ||||| |||||||||   | |   ||   |  | |  | |  |   ||||   | ||||||| ||  | |    |  || | |   ||||   || | |   |  || ||  
ATATGCTGATATATACACATCAAGGGTTTCAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacacagctccatactctgcttacctttggcattttgctattgttgtgtttattggtttagattcaagaatgccaattttcttaacaatgaagac

upper sequence: GLYMA17G04580.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 5'ss of exon 16
ATATGCTGATATTTATACATCTAGGGTGTCAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcagatgactgt----tttttaatcatataaagcataaggttattgttttgactttaa-actgacttagatatgcttctttgtgctctgcag----
 |||||||||||||| || |||||||| ||||||||  |  ||||||||||||| |||||||| | ||| ||||||||||||||||||  | | |    || |  |||||||      |   ||| ||      | | ||   |  |  ||| || |   |     |  |    |    
GTATGCTGATATTTACACCTCTAGGGTCTCAAATTTCCTACATTATACACCCTTTATGTATTTTCACTCACAGGAACAGgtattcagagtattatggctttctgcatcatattttctgtcttgtttttacccccattatattgcataaataggtaggtcacgacaaggacaaagggcgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336741|gb|CO980607.1|CO980607
EST:     CCGCTCTCAGGAACAG                         AACCTTGCGCATGACTCATACACATACTATTGTTCACAACTTTATAATGAG
genomic: CCGCTCTCAGGAACAGgtattcagat ... tgctctgcagAACCTTGCGCATGACTCATACACATACTATTGTTCACAACTTTATAATGAG
EST: gi|51335476|gb|CO979342.1|CO979342
EST:     CAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAG                         AACCTTGCGCATGACTCATACACATACTATTGTTCACAACTTTATAATGAG
genomic: CAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcagat ... tgctctgcagAACCTTGCGCATGACTCATACACATACTATTGTTCACAACTTTATAATGAG
EST: gi|298169844|gb|HO018468.1|HO018468
EST:     CAAATTTTT-GTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAG                         AACCTTGCGCATGACTCATACACATACTATTGTTCACAACTTTATAATGAG
genomic: CAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcagat ... tgctctgcagAACCTTGCGCATGACTCATACACATACTATTGTTCACAACTTTATAATGAG
EST: gi|9901551|gb|BE610519.1|BE610519
EST:     CCGCTCTCAGGAACAG                         AACCTTGCGCATGACTCATACACATACTATTGTTCACAACTTTATAATGAG
genomic: CCGCTCTCAGGAACAGgtattcagat ... tgctctgcagAACCTTGCGCATGACTCATACACATACTATTGTTCACAACTTTATAATGAG
EST: gi|58022071|gb|CX708812.1|CX708812
EST:     CAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAG                         AACCTTGCGCATGACTCATACACATACTATTGTTCACAACTTTATAATGAG
genomic: CAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcagat ... tgctctgcagAACCTTGCGCATGACTCATACACATACTATTGTTCACAACTTTATAATGAG