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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTAATTAACAGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGATCCCCTTTATATTGTAAATAAGGTTCCTAATGGGTTGGAAATACCTCGgtaagtaataaatgtgatttatgttatcaaatcatagattgtatttgatttttttttagtatttgggctggcctcaagttccagagatatattcagtaagcattattcttaaggtgtttttctctgcttttctacag

Basic information

species Glycine max
transcript GLYMA11G19660.2
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19660.2 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G040247_T01 (Zea mays), 5'ss of exon 17
ATTGTAATTAACAGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGATCCCCTTTATATTGTAAATAAGGTTCCTAATGGGTTGGAAATACCTCGgtaagt---aataaatgtgat--ttatgttatcaaatcatagattgtatttgattttt----ttttagtatttgggctggcctcaagttccagagatatattcagtaagcatt--attcttaag----gtgtttttctctgcttttctacag
              || || |   ||||||| || |||||||| ||||||||||| || || ||||| | |  ||||||| |||| || |||||||||||||| ||   |  |||  | ||  | |  | |   |   | ||| | | ||  ||   |      || | |  |   || |   | |  | |   |||   |     || ||||  || |    |    |||||      |||||||  | ||
--------------GTAGGGAATCTATTGGAACATACAGTTGGCAATCTTGATCCTCTGTACATTGTCAGTTTGGTTCCTGATGGCTTAGAAATACCTCGgtatgttccatcaaaatttatcgtaaaataactgagctacagaatttcttgcatgactgaaaccttggcaaatatactcgaaacgatctgccatgattcttaatccaaccatttcatcccctggttgagtgttcactcatgcttttg-atag

upper sequence: GLYMA11G19660.2 (Glycine max), 5'ss of exon 16
lower sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 17
ATTGTAATTAACAGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGATCCCCTTTATATTGTAAATAAGGTTCCTAATGGGTTGGAAATACCTCGgtaagtaataaatgtga-------tttatgtta-tcaaatcatagattgtatttgatttttttttagtatttgggctggcctcaagttccagagatatattcagtaagcattattcttaaggtgtttttctctgcttttctacag
              |||||| |  | ||||||||||||||||| || || || || ||||| |||||||||| ||| || ||||| |||||||||||||||| |||  ||| | | |       ||  ||||| || | ||||   |||  ||  ||    | ||  || ||       | || |    ||   || |  |                                            
--------------GTGGGCTTGCTGTTGGAGCACACAGTTGGCAACCTCGACCCTCTTTACATTGTAAATATGGTCCCAAATGGCTTGGAAATACCTCGgttagttttaactattacccctcattgctgttactctattcatgagttg-gttcaatcacgtgttcttacttaaataaacatcgaccctcatctatgtgat--------------------------------------------

upper sequence: GLYMA11G19660.2 (Glycine max), 5'ss of exon 16
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 17
ATTGTAATTAACAGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGATCCCCTTTATATTGTAAATAAGGTTCCTAATGGGTTGGAAATACCTCGgtaagtaataaatgtgatttatgttatcaaatcatagattgtatttgatttttt-tttagtatttgggctggcctcaagttccagagatatattcagtaagcattattcttaaggtgtttttctctgcttttctacag
              || ||  | || ||||||||||| ||||| ||||||||||| || || |||||||||| ||| || ||||| ||||| |||||| |||  |||  |||        ||| | ||||||  |   ||  ||| || | ||  ||| | |     || |  ||  | ||| ||   | | |||  |     || || |                            
--------------GTAGGTGTGTTGTTGGAGCACACTGTTGGTAATCTTGATCCTCTCTACATTGTAAATATGGTGCCCAATGGCTTGGAGATACCTAGgttggtatcaaa--------atgatttcaaatttttatttcaattagaatcttaattttgcaacctagcag--ctttatttctagttttgtgttctttgttttttttttt----------------------------