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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGGAGGGAAAGCAAAAGGGCAGGGTACTGGGCCAGTGCTTGCGGTAACGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattgctactcacccctttgcttgaattgctttcaaaggcatatacttcgatatgtacactctatgatacctaagaaacaaacttctctgattttgtttcctttgtgaaaatttccag

Basic information

species Glycine max
transcript GLYMA08G00910.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193590264|gb|FK545292.1|FK545292
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
EST: gi|22930484|gb|BU547623.1|BU547623
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
EST: gi|14011207|gb|BG726129.1|BG726129
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATANGTGGGACAGAAAAGAAAGA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
EST: gi|207729143|gb|GD704911.1|GD704911
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTA
EST: gi|193447724|gb|FK415473.1|FK415473
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAG
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAG
EST: gi|193363038|gb|FK328802.1|FK328802
EST:     TGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
genomic: TGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
EST: gi|58016610|gb|CX703352.1|CX703352
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
EST: gi|207750236|gb|GD723404.1|GD723404
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGA-TAGGTGGGACAGAAAAGAAAGA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
EST: gi|207795561|gb|GD765858.1|GD765858
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGA-TAGGTGGGACAGAAAAGAAAGA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
EST: gi|193472095|gb|FK437098.1|FK437098
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAA-GGAATA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATA
EST: gi|207785492|gb|GD757017.1|GD757017
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCT
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCAGGAGGGAAAGCAAAAGGGCAGGGTACTGGGCCAGTGCTTGCGGTAACGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattgctactcacccctttgcttgaattgctttcaaaggcatatacttcgatatgtacactctatgatacctaagaaacaaacttctctgattttgtttcctttgtgaaaatttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC