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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGGGAGGAAAAGTGAAAGGGCAGGGAACTGGGGCAATCCTTGCTGTAACTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattactgttcactcttgcttgaagtgtttgtcatgtcctttggtttgattctccatggtcatacagaaacaataccccacaaatatgccttttcttattattgtttttttgtggaatttccag

Basic information

species Glycine max
transcript GLYMA06G17050.4
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481514|gb|AW200785.1|AW200785
EST:     CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAG                         GAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
genomic: CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
EST: gi|7232782|gb|AW568135.1|AW568135
EST:     CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAG                         GAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
genomic: CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
EST: gi|192297582|gb|FG989559.1|FG989559
EST:     CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAG                         GAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
genomic: CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
EST: gi|298179716|gb|HO024931.1|HO024931
EST:     CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAG                         GAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
genomic: CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
EST: gi|193433938|gb|FK403254.1|FK403254
EST:     GTGGATGCTGTAAATTCAGCGTTAATGCTGCCATGCTACAG                         GAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
genomic: GTGGATGCTG-AAA-TCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
EST: gi|51336882|gb|CO980748.1|CO980748
EST:     CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAG                         GAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
genomic: CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
EST: gi|298180713|gb|HO022152.1|HO022152
EST:     CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATACTGCCATGCTACAG                         GAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
genomic: CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
EST: gi|298169310|gb|HO020670.1|HO020670
EST:     CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAG                         GAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
genomic: CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
EST: gi|21888619|gb|BQ741832.1|BQ741832
EST:     CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAG                         GAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
genomic: CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
EST: gi|11687423|gb|BF595099.1|BF595099
EST:     CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAN                         GAAGGGCTTGCTAGGACAGAATATAGAAACAGGTGGGACAGAAAAGACAGA
genomic: CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
EST: gi|298193157|gb|HO033591.1|HO033591
EST:     CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAG                         GAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
genomic: CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
EST: gi|6747617|gb|AW318130.1|AW318130
EST:     CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAN                         GAAGGGCTTGCTAGGACAGAAAAAAGAAACACGTGGGACAGACAAGACAGA
genomic: CTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCGGGAGGAAAAGTGAAAGGGCAGGGAACTGGGGCAATCCTTGCTGTAACTCTTGTTGCTGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattactgttcactcttgcttgaagtgtttgtcatgtcctttggtttgattctccatggtcatacagaaacaataccccacaaatatgccttttcttattattgtttttttgtggaatttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC