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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCGgtattcattttcacttgatggcaatataacctatatttatatatactggttaagaagttgtacatatttcaaaaggccttcatcttaattctgtgtgtcttgcag

Basic information

species Glycine max
transcript GLYMA20G21330.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G21330.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G324540_T01 (Zea mays), 5'ss of exon 15
ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCGgtattcattttcac--ttgatggcaatataa---cctatatttatatatactggttaagaagttgtacatatttcaaaaggccttcatcttaattctgtgtgtcttgcag
||||||||||||||||||||||||||||||||||| |||||| | |  || || |||| |||  |||| ||||||| ||| || ||||| |   | ||||   |  ||  |  |  |  |  | | |    |  ||  ||  || | |   |  | || || ||  |||    | |||   ||||   |    ||| ||   ||   
ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTGgtaagtaacttggccatgaacagttagaaaggtgcacatgcttgcatttgcatatgtataa-ttatagctatcgggagaggg--tcattcga----tgtatgaaatg---

upper sequence: GLYMA20G21330.1 (Glycine max), 5'ss of exon 15
lower sequence: AC205703.4_FGT004 (Zea mays), 5'ss of exon 5
ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCGgtattcattttcact-tgat--ggcaatataacctatatttatatatactggt-taagaagttgtacatatttcaaaaggccttcatcttaattctgtgtgtcttgcag
||| ||||||||||||||||||||||||||||||| |||||| | |  || || |||| |||  |||| ||||||| ||| || ||||| |   | ||||   |  ||  |  |||   |  |  ||     |     |   |||||| | |    | || ||  |||    | |||   ||||   |    ||| ||   ||   
ACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTGgtaagtaacttggccatgaacagttagaatggtgcacgccaaccaatactgatatgtataattatagctatcgggagaggg--tcattcga----tgtatgaaatg---

upper sequence: GLYMA20G21330.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G037698_T02 (Zea mays), 5'ss of exon 15
ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCGgtattcattttcacttgatggcaatataacctatatttatatatactggttaagaagttgtacatatttcaaaaggccttcatcttaattctgtgtgtcttgcag
|||||||||||||||||||| |||||||||||||| || ||| | |  || || ||||  ||  |||| |||||||| || || ||||| |   | ||||   |  ||  || |     |  |  |    |    ||   | |   |  | |  | |  |  |    | | || | |    || ||    |      |    
ACTGCTGCTCATGATGGTGTCAAGCTTTGGGATCTTCGGAAATTAAGAAATTTTAGGACCTTCTCTCCCTATGATTCAGATACGCCAACAAATACTGgtaagtaacttggct-gtgaaaaccaagaatggtgcacatgcttgcatatgcatagctagagctaacgggagagggtcatttgatttatgaaattcactat----

upper sequence: GLYMA20G21330.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv05s0049g01840.t01 (Vitis vinifera), 5'ss of exon 15
ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCGgtattcattttcacttgatggcaatataacctatatttatatatactggttaagaagttgtacatatttca--aaaggccttcatcttaattctgtgtgtcttgcag
||||| |||||||||||||||||||| ||||||||||| ||| ||| ||| ||| |||  ||| | |||||||||||  | ||| |||| | ||| |||||  ||  ||| || ||  ||        |  |    ||   |  | |||||  ||  || |  | | |  || ||     |  ||||    ||  |   |    
ACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAATTTCCGGACCTTTACACCATATGATTCAAATACAGCAACAAACTCTGgtatgtat--tcagtttatt-caccgagtttttaaaccttacgaagagattaagctgtattaaacttctgattaagggggaaaagtttaaactagttggaaat----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317196|gb|GR826141.1|GR826141
EST:     GAAACACCAACGAGCTCCG                         TGGAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAA
genomic: GAAACACCAACGAGCTCCGgtattcattt ... tgtcttgcagTGGAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAA
EST: gi|58023351|gb|CX710092.1|CX710092
EST:     GCTCCATATGATTCGGAAACACCAACGAGCTCCG                         T-GAGTTCGACCACAGTGGGTCNTACNTAGCAGTTGCTGGTTCTGATATAA
genomic: GCTCCATATGATTCGGAAACACCAACGAGCTCCGgtattcattt ... tgtcttgcagTGGAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAA
EST: gi|58023646|gb|CX710387.1|CX710387
EST:     GAACTTCAGGAA-TTTGCTCCATATGATTCGGAAACACCAACGAGCTCC-                         TGGAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAA
genomic: GAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCGgtattcattt ... tgtcttgcagTGGAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAA