Sequence
atgc intronic sequence ATGC exonic sequenceTGGTGTTGCTCTTCTATATGCATCGAGAGAGTTGGATAAACTTCAAACTGCTAACTTCGGTCAAAAGATTGGTGTCCAGATTATCCAAAATGCTTTAAAGgtcagttttctctgaattttttctgatttcctctttagctcctccatattgcattttttatgcttacactttgtatcttgtggaaggaaaaccagcacca...
Basic information
species | Glycine max |
transcript | GLYMA20G19980.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G19980.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os03g04970.1 (Oryza sativa), 5'ss of exon 15
TGGTGTTGCTCTTCTATATGCATCGAGAGAGTTGGATAAACTTCAAACTGCTAACTTCGGTCAAAAGATTGGTGTCCAGATTATCCAAAATGCTTTAAAGgtcagttttctctgaattttttctgatttcctctttagctcctccatattgcattttttatgcttacactttgtatcttgtggaaggaaaaccagcacca
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TGGAGTTGCCCTTCTGTATGCATCAAAAGACCTGGATAAATTGCAGACTGCGAACTTTGACCAAAAGATTGGTGTCCAGATCATTCAAAATGCTTTGAAGgtttacaaatcccattttgttttcaattgttcct----ctcttgcttgctccatcta--atggctggataatgc----tgcag-----------------
upper sequence: GLYMA20G19980.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 15
TGGTGTTGCTCTTCTATATGCATCGAGAGAGTTGGATAAACTTCAAACTGCTAACTTCGGTCAAAAGATTGGTGTCCAGATTATCCAAAATGCTTTAAAGgtcagttttctctgaattttttctgatttcctctttagctcctccatattgcattttttatgcttac--actttgtatcttgtggaaggaaaaccagcacca
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AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagggat-aataacttctcatttcctgttttgctgatttcttctctgggagcaaaacctgatgacaacttattttgcag-----------------
upper sequence: GLYMA20G19980.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G111477_T01 (Zea mays), 5'ss of exon 3
TGGTGTTGCTCTTCTATATGCATCGAGAGAGTTGGATAAACTTCAAACTGCTAACTTCGGTCAAAAGATTGGTGTCCAGATTATCCAAAATGCTTTAAAGgtcagttttctctgaattttttctgatttcctctttagctcctccatattgcattttttatgcttacactttgtatcttgtggaaggaaaaccagcacca
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TGGTGTTGCTCTTCTCTATGCATCGAAGGAGCTTGATAAATTGCAGACAGCGAACTTCGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtccggtggcaagaaagtt-----ggatgtcttttcaggactcgtacat---gtttgctaacctaacatgcaatattttgtatgcag-------------
upper sequence: GLYMA20G19980.1 (Glycine max), 5'ss of exon 15
lower sequence: AT3G23990.1 (Arabidopsis thaliana), 5'ss of exon 13
TGGTGTTGCTCTTCTATATGCATCGAGAGAGTTGGATAAACTTCAAACTGCTAACTTCGGTCAAAAGATTGGTGTCCAGATTATCCAAAATGCTTTAAAGgtcagtt-ttctct-gaatt----ttttctgatttcctctttagctcctccatattgcattttttatgcttacactttgtatcttgtggaaggaaaaccagcacca
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AGGTGTGGCTCTTCTATACGCAGCAAGAGAGTTGGAAAAACTTCCAACAGCCAACTTTGACCAGAAGATTGGTGTCCAGATTATTCAGAACGCATTGAAGgttttctattctttagaactaaaatcctctgatctgataattgatgacaagaaattgt-tttaacgagttttggtttaccag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16279136|gb|BI943277.1|BI943277EST: CTAACTTCGGTCAAAAGATTGGTGTCCAGATTATCCAAAATGCTTTAAAG ACACCTGTGCTCACTATTGCATCAAATGCGGGAGTTGAGGGTGCAGTTGTT
genomic: CTAACTTCGGTCAAAAGATTGGTGTCCAGATTATCCAAAATGCTTTAAAGgtcagttttc ... aataatgcagACACCTGTGCTCACTATTGCATCAAATGCGGGAGTTGAGGGTGCAGTTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTGTTGCTCTTCTATATGCATCGAGAGAGTTGGATAAACTTCAAACTGCTAACTTCGGTCAAAAGATTGGTGTCCAGATTATCCAAAATGCTTTAAAGgtcagttttctctgaattttttctgatttcctctttagctcctccatattgcattttttatgcttacactttgtatcttgtggaaggaaaaccagcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc