Sequence
atgc intronic sequence ATGC exonic sequenceGTACTTTTCAATGATACAATATTTCATAACATTCACTATGGTCGGCTATCAGCAACAAAAGAGGAGgtaacttctgtaatgttgtacctctgcttgcttcttcacctagcaaatttccactgtaggttctaagttgtacttatcttattactatatgcatacag
Basic information
species | Glycine max |
transcript | GLYMA14G38800.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G38800.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 18
GTACTTTTCAATGATACAATATTTCATAACATTCACTATGGTCGGCTATCAGCAACAAAAGAGGAGgt--------aacttctgtaatgttgtacctctgcttgcttcttcacctagcaaatttccactgtaggttctaagttgtacttatcttattactatatgcatacag
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GTACTTTTCAATGATACAATATTCCACAACATTCAGTATGGTCGTCTTTCAGCAACCAACGAGGAGgtttgaaacgaactctgttaattttactaatgtgttttatctgaaaatcatgcaatgtcatgcttggttgttgtattagactaatatttaaattattgctccacag
upper sequence: GLYMA14G38800.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ24600 (Selaginella moellendorffii), 5'ss of exon 14
GTACTTTTCAATGATACAATATTTCATAACATTCACTATGGTCGGCTATCAGCAACAAAAGAGGAGgtaacttctgtaatgttgtacctctgcttgcttcttcacctagcaaatttccactgtaggttctaagttgtacttatcttattactatatgcatacag
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GTTCTTTTCAATGATACTATCTTCTACAACATTCAGTATGGTCGGCTATCAGCAACTGAGGAAGAGgtaagccct------ttctttgtccgtgcggtacttaacttgacgaacag------------------------------------------------
upper sequence: GLYMA14G38800.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ24035 (Selaginella moellendorffii), 5'ss of exon 14
GTACTTTTCAATGATACAATATTTCATAACATTCACTATGGTCGGCTATCAGCAACAAAAGAGGAGgtaacttctgtaatgttgtacctctgcttgcttcttcacctagcaaatttccactgtaggttctaagttgtacttatcttattactatatgcatacag
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GTTCTTTTCAATGATACTATCTTCTACAACATTCAGTATGGTCGGCTATCAGCAACTGAGGAAGAGgtaagcccttcctttgtctgtg-cggtacataccttaacttgacgaacag------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23734500|gb|BU765482.1|BU765482EST: CAATATTTCATAACATTCACTATGGTCGGCTATCAGCAACAAAAGAGGAG GTCTATGAAGCTGCTCAACAAGCAGCAATTCATAACACTATCATGAATTTT
genomic: CAATATTTCATAACATTCACTATGGTCGGCTATCAGCAACAAAAGAGGAGgtaacttctg ... atgcatacagGTCTATGAAGCTGCTCAACAAGCAGCAATTCATAACACTATCATGAATTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACTTTTCAATGATACAATATTTCATAACATTCACTATGGTCGGCTATCAGCAACAAAAGAGGAGgtaacttctgtaatgttgtacctctgcttgcttcttcacctagcaaatttccactgtaggttctaagttgtacttatcttattactatatgcatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG