Sequence
atgc intronic sequence ATGC exonic sequenceAGGAGAATATTCTGATCTTAGTGTAGAGGAGCGTCTAAACGCTCTTGTTGCATTGGTTGGTGTGGCAAATGAAGGAAATTCGATCCGTGTTGTTCTTGAGgtgcaattctttcctgtctaatgtgtttcttaagtttatttttatttagattttaagttgacatagcgagtattgtag
Basic information
species | Glycine max |
transcript | GLYMA13G30860.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G30860.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os05g48820.1 (Oryza sativa), 5'ss of exon 13
AGGAGAATATTCTGATCTTAGTGTAGAGGAGCGTCTAAACGCTCTTGTTGCATTGGTTGGTGTGGCAAATGAAGGAAATTCGATCCGTGTTGTTCTTGAGgtgcaattctttcctgtctaatgtgtttcttaagtttatttttatttagattttaagttgacatagcgagtattgtag
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GGGTGACTACTGTGATCTCAGTGTTGAGGAGCGCCTCAATGCATTGGTTGCATTGATTGGTGTTGCCACTGAAGGAAATTCTATACGTGCAGTTCTTGAGgtaattatcttgcatgatcttgatatcttgtcattttcccatcatctgaaccaaaagg-atctttgcag---------
upper sequence: GLYMA13G30860.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv10s0003g00270.t01 (Vitis vinifera), 5'ss of exon 4
AGGAGAATATTCTGATCTTAGTGTAGAGGAGCGTCTAAACGCTCTTGTTGCATTGGTTGGTGTGGCAAATGAAGGAAATTCGATCCGTGTTGTTCTTGAGgtgcaattctttcctgtctaatgtg-tttcttaagtttattt-ttatttagattt-taagttgacatagcgagtattgtag--------------------------------------------------------------------------------
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AGGGGAATACTCTGATCTCAGTGTTGAGGAGCGTCTTAATGCCCTGGTTGCCTTAATTGGTGTTGCAAATGAGGGAAACACTATTCGTGCTGTTCTTGAGgttatcttcccttttcaattctctgatctgttaaattgctttatcatctagttttatttatttacatgtttaagtttttgttttgttttgacttgtcctttttttttttttttgttgtcattttccaattatcattgtgtctgatatcaagagttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193551833|gb|FK506490.1|FK506490EST: CATTGGTTGGTGTGGCAAATGAAGGAAATTCGATCCGTGTTGTTCTTGAG GATCGACTGGAATCAGCAAATGCTCTGAAGAAACAAATGTGGGCTGAAGCA
genomic: CATTGGTTGGTGTGGCAAATGAAGGAAATTCGATCCGTGTTGTTCTTGAGgtgcaattct ... agtattgtagGATCGACTGGAATCAGCAAATGCTCTGAAGAAACAAATGTGGGCTGAAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAGAATATTCTGATCTTAGTGTAGAGGAGCGTCTAAACGCTCTTGTTGCATTGGTTGGTGTGGCAAATGAAGGAAATTCGATCCGTGTTGTTCTTGAGgtgcaattctttcctgtctaatgtgtttcttaagtttatttttatttagattttaagttgacatagcgagtattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA