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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATTGAGATTCTGTTCAGCAAAAAGATATTCCTTAATATGGAGgttagtttgcctttctgttctttatttttcatctttcttgttagtaaccctttatattgatttgtttgctagagatgtgtggttatcatttacacttggc...

Basic information

species Glycine max
transcript GLYMA10G42560.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42560.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv12s0055g01220.t01 (Vitis vinifera), 5'ss of exon 1
--ACCATTGAGATTCTGTTCAGCAAAAAGATATTCCTTAATATGGAGgttagtttgcctttctgttctttatttttcatctttcttgttagtaaccctttatattgatttgtttgctagagatgtgtggttatcatttaca-cttggc---
  |||||||||||||| |||||||||||||||||  | || |||||||||||||  |  |    |  ||||||  |   ||   |      | |   |||  |||  ||| |    |  |  | | || | ||   |  ||  ||| |   
AGACCATTGAGATTCTTTTCAGCAAAAAGATATTATTGAACATGGAGgttagttgacactctcct--tttattgctatgctaattcacagatgatagtttcaatt--tttttcccattcaattttttgttcattgctatcaatttgacgat

upper sequence: GLYMA10G42560.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv07s0141g00460.t01 (Vitis vinifera), 5'ss of exon 1
------ACCATTGAGATTCTGTTCAGCAAAAAGATATTCCTTAATATGGAGgttagtttgcctttctgttctttatttttcatctttcttgttagtaaccctttatattgatttgtttgctag--agatgtgtggttatcatttacacttggc
      ||| |||||||||| |||||||||||||||||  | || |||||||||||||  |  |    |  ||||||  |   ||   |      | |     | | |  |||| ||| | |   | || | || | ||   |  || || | 
TTTAAGACCTTTGAGATTCTTTTCAGCAAAAAGATATTATTGAACATGGAGgttagttgacactctcct--tttattgctatgctaattcacagatgatagaatgtttcaatttttttcccattcaaatttttgttcattgctatcaatttga

upper sequence: GLYMA10G42560.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv15s0048g00470.t01 (Vitis vinifera), 5'ss of exon 15
ACCATTGAGATTCTGTTCAGCAAAAAGATATTCCTTAATATGGAGgttagtttgcctttctgttctttatttttcatctttcttgttagtaaccctttatattgatttgtttgctag--agatgtgtggttatcatttacacttggc
|||||||||||||| |||||||||||||||||  | || |||||||||||||  |  |    |  ||||||  |   ||   |        |     | | |  |||| ||| | |   |  | | || |  |   |  || || | 
ACCATTGAGATTCTTTTCAGCAAAAAGATATTATTGAACATGGAGgttagttgacactctcct--tttattgctatgctaattcacagacgatagaatgtttcaatttttttcccattcaattttttgttccttgctatcaatttga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336337|gb|CO980203.1|CO980203
EST:     ACCATTGAGATTCTGTTCAGCAAAAAGATATTCCTTAATATGGAG                         GCTCACACTCCAGCTTTTTGTGGTGCTGTTTTGGATTCTGTGTCATTTGAA
genomic: ACCATTGAGATTCTGTTCAGCAAAAAGATATTCCTTAATATGGAGgttagtttgc ... gtattttcagGCTCACACTCCAGCTTTTTGTGGTGCTGTTTTGGATTCTGTGTCATTTGAA
EST: gi|12773607|gb|BG238534.1|BG238534
EST:     ACCATTGAGATTCTGTTCAGCAAAAAGATATTCCTTAATATGGAG                         GCTCACACTCCAGCTTTTTGTGGTGCTGTTTTGGATTCTGTGTCATTTGAA
genomic: ACCATTGAGATTCTGTTCAGCAAAAAGATATTCCTTAATATGGAGgttagtttgc ... gtattttcagGCTCACACTCCAGCTTTTTGTGGTGCTGTTTTGGATTCTGTGTCATTTGAA