1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CCGCCTGGAACAAATAACTATTGCAAACTTAGGGAATGTTATCAACAGAGGGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAGgtatgatcttctgatgcatttctagtgccaccttcccaacatgaactacgttaatagtatattttctgaaatttcag
species | Glycine max |
transcript | GLYMA08G08920.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAG AGGTTGCAAGACGACAATAGAGTCATGAATAACTGATGGAGTGGTGCATATEST: gi|208296772|gb|GE091356.1|GE091356
genomic: GGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAGgtatgatctt ... gaaatttcagAGGTTGCAAGACGACAATAGAGTCATGA-TAACTGATGGAGTGGTGCATAT
EST: GGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAG AGGTTGCAAGACGACAATAGAGTCATGATAACTGATGGAGTGGTGCATATGEST: gi|16341642|gb|BI967237.1|BI967237
genomic: GGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAGgtatgatctt ... gaaatttcagAGGTTGCAAGACGACAATAGAGTCATGATAACTGATGGAGTGGTGCATATG
EST: GGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAG AGGTTGCAAGACGACAATAGAGTCATGATAACTGATGGAGTGGTGCATATGEST: gi|208209884|gb|GE006409.1|GE006409
genomic: GGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAGgtatgatctt ... gaaatttcagAGGTTGCAAGACGACAATAGAGTCATGATAACTGATGGAGTGGTGCATATG
EST: GGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAG AGGTTGCAAGACGACAATAGAGTCATGATAACTGATGGAGTGGTGACAATAEST: gi|208220916|gb|GE018052.1|GE018052
genomic: GGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAGgtatgatctt ... gaaatttcagAGGTTGCAAGACGACAATAGAGTCATGATAACTGATGGAGTGGTG-CA-TA
EST: GGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAG AGGTTGCAAGACGAACAATAGAGTCATGATAACTGATGGAGTGGTGCATATEST: gi|193441761|gb|FK407726.1|FK407726
genomic: GGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAGgtatgatctt ... gaaatttcagAGGTTGCAAGACGA-CAATAGAGTCATGATAACTGATGGAGTGGTGCATAT
EST: GGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAG AGGTTGCAAGACGACAATAGAGTCA
genomic: GGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAGgtatgatctt ... gaaatttcagAGGTTGCAAGACGACAATAGAGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCCTGGAACAAATAACTATTGCAAACTTAGGGAATGTTATCAACAGAGGGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAGgtatgatcttctgatgcatttctagtgccaccttcccaacatgaactacgttaatagtatattttctgaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT