1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GAACCTGAAGGATGCTCCTGTGCTTGGTGCTTTCAATCCTAAGAAGGGTGACATAGTCCTTTGTTATTTTCATGCTGACAAGTCTTGGTACCGGGCAATGgtaagttcctacacaatatttttttccccttccccccatactggtctaagcattgcaattctgtagctgaataaatgtggccattaaacaggggttggtt...
species | Glycine max |
transcript | GLYMA04G38010.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ACATAGTCCTTTGTTATTTTCATGCTGACAAGTCTTGGTACCGGGCAATG GTTGTCAATACACCCCGAGGACCAGTTGAATCACCTAACGACTTGTTCGAAEST: gi|192312165|gb|FK003900.1|FK003900
genomic: ACATAGTCCTTTGTTATTTTCATGCTGACAAGTCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAATACACCCCGAGGACCAGTTGAATCACCTAACGACTTGTTCGAA
EST: ACATAGTCCTTTGTTATTTTCATGCTGACAAGTCTTGGTACCGGGCAATG GTTGTCAATACACCCCGAGGACCAGTTGAATCACCTAACGACTTGTTCGAAEST: gi|192312166|gb|FK003901.1|FK003901
genomic: ACATAGTCCTTTGTTATTTTCATGCTGACAAGTCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAATACACCCCGAGGACCAGTTGAATCACCTAACGACTTGTTCGAA
EST: ACATAGTCCTTTGTTATTTTCATGCTGACAAGTCTTGGTACCGGGCAATG GTTGTCAATACACCCCGAGGACCAGTTGAATCACCTAACGACTTGTTCGAA
genomic: ACATAGTCCTTTGTTATTTTCATGCTGACAAGTCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAATACACCCCGAGGACCAGTTGAATCACCTAACGACTTGTTCGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACCTGAAGGATGCTCCTGTGCTTGGTGCTTTCAATCCTAAGAAGGGTGACATAGTCCTTTGTTATTTTCATGCTGACAAGTCTTGGTACCGGGCAATGgtaagttcctacacaatatttttttccccttccccccatactggtctaagcattgcaattctgtagctgaataaatgtggccattaaacaggggttggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggttg